C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calcium channel, voltage-dependent, beta 3 subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000301050 CACNB3-001 ENSG00000167535 9606 + 12:48818731-48828941 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000301050
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000301050 1.779±0.00 0.914±0.00 5.198±1.14 1.123±0.00 1.948±1.39 0.526±0.00 1.776±0.00 0.196±0.00 2.859±0.00 19.752±17.44 2.835±0.22 3.379±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003DH CIL_0003DH_0002 CGP 12:48766194-48828941
CIL_0003DO CIL_0003DO_0002 CGP 12:48813794-48852842

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005245 IDA:IEA voltage-gated calcium channel activity
GO:0005515 IEA protein binding
GO:0005829 TAS cytosol
GO:0005891 IDA:IEA voltage-gated calcium channel complex
GO:0006810 TAS transport
GO:0006816 IDA calcium ion transport
GO:0007268 TAS synaptic transmission
GO:0007411 TAS axon guidance
GO:0016020 IDA membrane
GO:0016324 IEA apical plasma membrane
GO:0019901 IEA protein kinase binding
GO:0034765 IEA regulation of ion transmembrane transport
GO:0050852 IEA T cell receptor signaling pathway
GO:0051899 TAS membrane depolarization
GO:0070588 IEA calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000003442 Cacnb3-201 protein_coding Mus_musculus 0 2582
ENSMUST00000109150 Cacnb3-202 protein_coding Mus_musculus 0 2351
ENSMUST00000107562 Cacnb1-004 protein_coding Mus_musculus 0 326
ENSMUST00000017552 Cacnb1-001 protein_coding Mus_musculus 0 326
ENSMUST00000103144 Cacnb1-201 protein_coding Mus_musculus 0 315
ENSMUST00000092736 Cacnb1-002 protein_coding Mus_musculus 0 315
ENSMUST00000107561 Cacnb1-003 protein_coding Mus_musculus 0 315

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