C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAD23a homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000003911 Rad23a-002 ENSMUSG00000003813 10090 - 8:84834652-84840641 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000003911
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000003911 9.719±1.93 27.584±0.00 8.834±1.44 6.855±1.02 12.353±3.02 10.785±1.69 8.430±0.50 8.422±1.57 16.549±10.21 9.902±1.78 22.123±3.84 12.333±1.31 11.501±3.63 8.961±0.83

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZV CIL_0007ZV_0002 VISTA 8:84428902-85032705
CIL_0007VV CIL_0007VV_0002 VISTA 8:84441926-85045230

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003684 IEA damaged DNA binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006289 IEA nucleotide-excision repair
GO:0006974 IGI cellular response to DNA damage stimulus
GO:0031593 IEA polyubiquitin binding
GO:0032434 IEA regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0043161 IEA proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0045070 IEA positive regulation of viral genome replication
GO:1990381 IEA ubiquitin-specific protease binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000316856 RAD23A-001 protein_coding Homo_sapiens 0 1731
ENST00000316939 GADD45GIP1-001 protein_coding Homo_sapiens 0 363
ENST00000586375 RAD23A-010 nonsense_mediated_decay Homo_sapiens 0 649
ENST00000586534 RAD23A-002 protein_coding Homo_sapiens 0 1729
ENST00000588329 RAD23A-006 retained_intron Homo_sapiens 0 824
ENST00000588826 RAD23A-007 processed_transcript Homo_sapiens 0 893
ENST00000590881 RAD23A-008 protein_coding Homo_sapiens 0 424
ENST00000591499 RAD23A-003 nonsense_mediated_decay Homo_sapiens 0 813
ENST00000592268 RAD23A-005 protein_coding Homo_sapiens 0 1037
ENST00000593114 RAD23A-004 nonsense_mediated_decay Homo_sapiens 0 1585

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