C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: histone cell cycle regulation defective homolog A (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000022702 Hira 10090 + 16:18877037-18970309 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000004222 Hira-001 18877066-18970309 protein_coding
  ENSMUST00000120532 Hira-002 18877037-18928030 protein_coding
  ENSMUST00000128321 Hira-004 18877412-18916586 retained_intron
  ENSMUST00000131444 Hira-006 18925577-18935135 retained_intron
  ENSMUST00000140748 Hira-009 18923073-18925657 processed_transcript
  ENSMUST00000144609 Hira-005 18877270-18910743 retained_intron
  ENSMUST00000150799 Hira-008 18933013-18947518 processed_transcript
  ENSMUST00000153397 Hira-003 18877270-18935080 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000004222ENSMUST00000120532ENSMUST00000150799ENSMUST00000153397
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000004222 9.431±4.14 6.402±0.95 9.137±1.34 28.875±4.51 6.722±2.58 7.972±2.02 3.333±0.41 5.074±2.08 6.224±3.78 7.316±3.29 2.883±0.40 12.145±4.42 6.047±2.99 1.413±0.00
ENSMUST00000120532 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.841±0.05 N/A N/A N/A
ENSMUST00000150799 N/A N/A N/A 42.949±0.00 N/A N/A N/A N/A N/A N/A N/A 47.599±0.00 40.426±18.33 N/A
ENSMUST00000153397 N/A N/A N/A 13.267±0.00 4.540±0.00 N/A N/A N/A N/A N/A N/A 11.937±0.00 20.073±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099J CIL_00099J_0002 VISTA 16:18285741-18886132
CIL_0008BW CIL_0008BW_0002 VISTA 16:18293232-18893684
CIL_0005F0 CIL_0005F0_0002 CGP 16:18836584-18956247

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000790 IDA nuclear chromatin
GO:0001649 IGI osteoblast differentiation
GO:0003682 IEA chromatin binding
GO:0005515 IPI protein binding
GO:0006336 IEA DNA replication-independent nucleosome assembly
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007369 IMP gastrulation
GO:0016568 IEA chromatin modification
GO:0042692 IGI muscle cell differentiation
GO:0043234 IEA protein complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000013434 hira HIR histone cell cycle regulation defective homolog A (S. cerevisiae) protein_coding Danio_rerio
ENSG00000100084 HIRA histone cell cycle regulator protein_coding Homo_sapiens

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