C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: bromodomain and WD repeat domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000341322 BRWD1-004 ENSG00000185658 9606 - 21:39296437-39313642 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000341322
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000341322 3.485±0.00 2.299±0.00 21.142±2.92 3.539±0.00 2.449±0.00 3.162±0.00 5.648±0.00 1.698±0.00 4.969±0.00 2.228±0.00 5.318±1.25 3.713±0.14 4.752±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007UB CIL_0007UB_0001 VISTA 21:38689433-39291200
CIL_0003GK CIL_0003GK_0001 CGP 21:39174769-39321559
CIL_0004KG CIL_0004KG_0001 CGP 21:39184176-39349647

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0007010 IMP cytoskeleton organization
GO:0008360 IMP regulation of cell shape

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000113827 Brwd1-003 protein_coding Mus_musculus 0 636
ENSMUST00000099502 Brwd1-201 protein_coding Mus_musculus 0 571
ENSMUST00000153398 Brwd1-009 protein_coding Mus_musculus 0 571
ENSMUST00000113829 Brwd1-001 protein_coding Mus_musculus 0 571
ENSMUST00000023631 Brwd1-002 protein_coding Mus_musculus 0 571
ENSMUST00000134412 Serf2-002 retained_intron Mus_musculus 0.00000000001 77
ENSMUST00000139253 Serf2-001 protein_coding Mus_musculus 0.00000000001 77
ENSMUST00000004428 Clcn5-001 protein_coding Mus_musculus 0.0000000001 73
ENSMUST00000114891 Igsf1-003 protein_coding Mus_musculus 0.00005 55

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