C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: leucine zipper-EF-hand containing transmembrane protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000005431 Letm1-001 ENSMUSG00000005299 10090 - 5:33739673-33782817 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000005431
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000005431 14.395±1.44 23.872±3.25 3.205±0.01 18.052±10.88 13.099±2.55 25.167±1.51 12.917±0.87 21.522±1.13 7.398±5.56 8.961±2.69 3.747±0.28 12.098±3.89 11.972±7.82 3.275±1.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007TX CIL_0007TX_0002 VISTA 5:33275293-33875875
CIL_0006V3 CIL_0006V3_0002 CGP 5:33721724-33782817
CIL_0006V8 CIL_0006V8_0002 CGP 5:33739673-33897975

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005739 IDA mitochondrion
GO:0005743 IDA mitochondrial inner membrane
GO:0016021 IEA integral component of membrane
GO:0042407 IEA cristae formation
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000302787 LETM1-001 protein_coding Homo_sapiens 0 2233
ENST00000421439 AC018442.1-001 processed_pseudogene Homo_sapiens 0 1110
ENST00000466175 LETM1-002 retained_intron Homo_sapiens 0 785
ENST00000505551 LETM1-003 retained_intron Homo_sapiens 0 688
ENST00000511977 LETM1-006 retained_intron Homo_sapiens 0 575
ENST00000597330 LETM1P2-001 processed_pseudogene Homo_sapiens 0 1507
ENST00000604293 RP11-622C24.1-001 processed_pseudogene Homo_sapiens 0 946

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