C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006V3_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000068078-ENSG00000168924 CGP 9606 4:1793307-1856247
GeneTranscriptPositionBiotype
ENSG00000068078 (FGFR3)
fibroblast growth factor receptor 3 		ENST00000260795 (FGFR3-001) 1793833-1808871 protein_coding
ENST00000340107 (FGFR3-201) 1793312-1808872 protein_coding
ENST00000352904 (FGFR3-002) 1793896-1808871 protein_coding
ENST00000412135 (FGFR3-202) 1793312-1808872 protein_coding
ENST00000440486 (FGFR3-203) 1793312-1808872 protein_coding
ENST00000469068 (FGFR3-005) 1804492-1805859 retained_intron
ENST00000474521 (FGFR3-004) 1801629-1803152 processed_transcript
ENST00000481110 (FGFR3-006) 1793307-1808865 protein_coding
ENST00000507588 (FGFR3-007) 1801462-1803739 protein_coding
ENST00000613647 (FGFR3-204) 1793312-1808872 protein_coding
ENSG00000168924 (LETM1)
leucine zipper-EF-hand containing transmembrane protein 1 		ENST00000302787 (LETM1-001) 1811479-1856247 protein_coding
ENST00000466175 (LETM1-002) 1834100-1855955 retained_intron
ENST00000505551 (LETM1-003) 1833074-1843211 retained_intron
ENST00000510940 (LETM1-007) 1819372-1822642 retained_intron
ENST00000511977 (LETM1-006) 1822774-1832879 retained_intron
ENST00000512189 (LETM1-005) 1846474-1855971 processed_transcript
ENST00000512669 (LETM1-004) 1834206-1839342 retained_intron
CIL_0006V3_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000054252-ENSMUSG00000005299 CGP 10090 5:33721724-33782817
GeneTranscriptPositionBiotype
ENSMUSG00000005299 (Letm1)
leucine zipper-EF-hand containing transmembrane protein 1 		ENSMUST00000005431 (Letm1-001) 33739673-33782817 protein_coding
ENSMUST00000144071 (Letm1-004) 33769562-33770454 processed_transcript
ENSMUST00000148451 (Letm1-002) 33776455-33782737 retained_intron
ENSMUST00000149886 (Letm1-003) 33742534-33753562 retained_intron
ENSMUSG00000054252 (Fgfr3)
fibroblast growth factor receptor 3 		ENSMUST00000067150 (Fgfr3-001) 33721724-33737067 protein_coding
ENSMUST00000087820 (Fgfr3-002) 33722398-33735607 protein_coding
ENSMUST00000114411 (Fgfr3-201) 33721724-33737068 protein_coding
ENSMUST00000132724 (Fgfr3-006) 33729964-33733283 retained_intron
ENSMUST00000134610 (Fgfr3-003) 33723004-33732790 retained_intron
ENSMUST00000142860 (Fgfr3-004) 33734605-33735564 retained_intron
ENSMUST00000152661 (Fgfr3-005) 33733692-33734913 retained_intron
ENSMUST00000155002 (Fgfr3-007) 33723772-33729850 protein_coding
ENSMUST00000164207 (Fgfr3-008) 33721791-33737063 protein_coding
ENSMUST00000169212 (Fgfr3-202) 33721724-33737068 protein_coding
ENSMUST00000171509 (Fgfr3-203) 33722306-33737068 protein_coding
ENSMUST00000181298 (Fgfr3-009) 33729738-33732743 processed_transcript
ENSMUSG00000059064 (Gm10059)
predicted pseudogene 10059 		ENSMUST00000131139 (Gm10059-001) 33759366-33759533 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006V3_0001ENSG00000068078ENST00000260795ENST00000340107ENST00000352904ENST00000412135ENST00000440486ENST00000469068ENST00000474521ENST00000481110ENST00000507588ENST00000613647ENSG00000168924ENST00000302787ENST00000466175ENST00000505551ENST00000510940ENST00000511977ENST00000512189ENST00000512669CIL_0006V3_0002ENSMUSG00000005299ENSMUST00000005431ENSMUST00000144071ENSMUST00000148451ENSMUST00000149886ENSMUSG00000054252ENSMUST00000067150ENSMUST00000087820ENSMUST00000114411ENSMUST00000132724ENSMUST00000134610ENSMUST00000142860ENSMUST00000152661ENSMUST00000155002ENSMUST00000164207ENSMUST00000169212ENSMUST00000171509ENSMUST00000181298ENSMUSG00000059064ENSMUST00000131139
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006V3_0001ENSG00000068078ENST00000260795ENST00000340107ENST00000352904ENST00000412135ENST00000440486ENST00000469068ENST00000474521ENST00000481110ENST00000613647ENSG00000168924ENST00000302787CIL_0006V3_0002ENSMUSG00000005299ENSMUST00000005431ENSMUST00000149886ENSMUSG00000054252ENSMUST00000067150ENSMUST00000087820ENSMUST00000114411ENSMUST00000134610ENSMUST00000152661ENSMUST00000164207ENSMUST00000169212ENSMUST00000171509ENSMUSG00000059064ENSMUST00000131139
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000068078 ENST00000260795 N/A 0.656±0.00 0.971±0.00 24.377±17.28 N/A 0.415±0.00 N/A N/A N/A N/A N/A 0.256±0.00 3.960±1.21 10.740±4.80
ENST00000340107 0.142±0.00 N/A 0.915±0.00 N/A 0.436±0.00 0.347±0.00 0.085±0.00 2.353±0.07 3.042±2.72 1.866±1.47 N/A 1.619±1.47 N/A N/A
ENST00000352904 N/A N/A N/A N/A N/A 0.453±0.00 0.068±0.00 0.649±0.00 N/A N/A 0.106±0.01 0.947±0.47 3.705±0.00 2.270±0.00
ENST00000412135 N/A N/A N/A N/A N/A N/A N/A 0.476±0.00 N/A N/A N/A N/A N/A N/A
ENST00000440486 N/A N/A N/A N/A N/A N/A N/A 1.244±0.00 N/A N/A N/A N/A N/A N/A
ENST00000469068 N/A N/A N/A N/A N/A N/A 0.332±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000474521 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.985±0.00 N/A N/A
ENST00000481110 N/A 0.494±0.00 N/A 1.285±0.00 0.115±0.00 0.112±0.00 N/A N/A N/A 0.304±0.00 N/A N/A N/A N/A
ENST00000507588 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000613647 N/A N/A N/A N/A N/A 0.171±0.00 N/A 1.221±0.00 N/A N/A N/A 0.163±0.00 N/A N/A
ENSG00000168924 ENST00000302787 5.493±0.00 5.305±0.00 0.733±0.00 5.998±3.20 4.704±3.27 5.383±2.44 5.398±1.97 5.083±4.66 6.653±0.00 4.007±2.09 8.361±0.00 6.641±4.05 4.324±2.72 11.078±5.91
ENST00000466175 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505551 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510940 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511977 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512189 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512669 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000005299 ENSMUST00000005431 14.395±1.44 23.872±3.25 3.205±0.01 18.052±10.88 13.099±2.55 25.167±1.51 12.917±0.87 21.522±1.13 7.398±5.56 8.961±2.69 3.747±0.28 12.098±3.89 11.972±7.82 3.275±1.20
ENSMUST00000144071 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148451 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149886 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.307±0.00 2.664±0.00 N/A
ENSMUSG00000054252 ENSMUST00000067150 0.607±0.00 0.803±0.32 N/A 10.044±4.77 0.688±0.00 N/A 1.334±0.29 4.608±0.00 1.158±0.23 N/A 0.241±0.00 1.737±0.18 N/A 0.542±0.15
ENSMUST00000087820 1.281±0.00 N/A N/A N/A N/A N/A 0.903±0.00 N/A N/A N/A 0.343±0.00 1.330±0.00 N/A 0.485±0.00
ENSMUST00000114411 N/A N/A 6.979±1.68 N/A N/A 7.476±2.16 N/A N/A 2.124±0.00 N/A N/A 1.312±0.00 0.973±0.00 N/A
ENSMUST00000132724 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134610 N/A 0.298±0.01 N/A N/A 0.758±0.29 6.591±1.31 1.200±0.00 6.404±1.43 1.888±1.47 29.163±0.16 0.189±0.00 2.084±0.68 N/A 0.438±0.00
ENSMUST00000142860 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152661 N/A N/A N/A 100.571±0.00 N/A N/A N/A N/A N/A N/A N/A 9.942±0.00 3.251±0.34 1.633±0.00
ENSMUST00000155002 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000164207 1.952±0.53 0.590±0.29 N/A 6.534±0.79 1.201±0.37 4.293±0.57 0.728±0.16 7.062±1.73 1.145±0.96 32.732±4.27 0.230±0.00 2.315±1.19 1.234±0.60 0.929±0.00
ENSMUST00000169212 N/A N/A N/A 2.443±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.583±0.11
ENSMUST00000171509 0.554±0.00 N/A 5.211±2.06 9.536±0.00 2.126±0.30 12.917±1.53 0.481±0.00 7.385±2.58 4.854±3.72 26.388±1.34 0.237±0.03 1.602±0.50 1.932±1.02 0.080±0.00
ENSMUST00000181298 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000059064 ENSMUST00000131139 N/A 32.315±0.00 5.513±0.00 1.109±0.00 107.386±0.00 N/A 15.130±0.00 N/A 4.943±1.53 81.221±0.00 N/A 29.051±35.12 10.513±1.76 N/A

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