C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: biogenesis of lysosomal organelles complex-1, subunit 6, pallidin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000005954 Bloc1s6-001 ENSMUSG00000005804 10090 + 2:122738503-122749475 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaENSMUST00000005954
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta
ENSMUST00000005954 1.899±0.11 2.551±0.77 1.097±0.00 1.466±0.00 2.205±0.44 3.307±0.68 1.465±0.05 2.888±0.26 2.230±0.30 2.229±0.20 2.216±0.86 3.047±0.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004QN CIL_0004QN_0003 CGP 2:122681233-122749475
CIL_0004NC CIL_0004NC_0002 CGP 2:122738503-122809569

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 ISS cytoplasm
GO:0005768 IDA endosome
GO:0006904 TAS vesicle docking involved in exocytosis
GO:0006906 TAS vesicle fusion
GO:0007596 IMP blood coagulation
GO:0008089 IMP anterograde axon cargo transport
GO:0019898 ISS extrinsic component of membrane
GO:0030133 ISS transport vesicle
GO:0030318 IMP melanocyte differentiation
GO:0031083 ISS BLOC-1 complex
GO:0031175 IMP neuron projection development
GO:0031201 ISS SNARE complex
GO:0032402 ISS melanosome transport
GO:0032816 IMP positive regulation of natural killer cell activation
GO:0033299 IMP secretion of lysosomal enzymes
GO:0035646 ISS endosome to melanosome transport
GO:0042802 IEA identical protein binding
GO:0042803 ISS protein homodimerization activity
GO:0043473 IMP pigmentation
GO:0048490 IMP anterograde synaptic vesicle transport
GO:0050942 ISS positive regulation of pigment cell differentiation
GO:0051015 ISS actin filament binding
GO:0061025 IPI membrane fusion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000220531 BLOC1S6-001 protein_coding Homo_sapiens 0 455
ENST00000358001 RP3-499B10.3-001 processed_pseudogene Homo_sapiens 1.4013e-45 187
ENST00000562384 BLOC1S6-007 protein_coding Homo_sapiens 0 309
ENST00000564310 BLOC1S6-020 nonsense_mediated_decay Homo_sapiens 0 246
ENST00000564765 BLOC1S6-019 protein_coding Homo_sapiens 0 200
ENST00000565216 BLOC1S6-012 protein_coding Homo_sapiens 0 311
ENST00000565323 BLOC1S6-015 protein_coding Homo_sapiens 0 396
ENST00000565409 BLOC1S6-018 protein_coding Homo_sapiens 0 396
ENST00000566801 BLOC1S6-014 protein_coding Homo_sapiens 3e-34 148
ENST00000567461 BLOC1S6-006 protein_coding Homo_sapiens 0 309
ENST00000567523 BLOC1S6-003 nonsense_mediated_decay Homo_sapiens 0 429
ENST00000568816 BLOC1S6-004 protein_coding Homo_sapiens 0 309
ENST00000568963 BLOC1S6-008 nonsense_mediated_decay Homo_sapiens 0 303
ENST00000569076 BLOC1S6-009 protein_coding Homo_sapiens 0 298

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