C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ERGIC and golgi 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000006035 Ergic3-001 ENSMUSG00000005881 10090 + 2:156008045-156018279 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000006035
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000006035 114.122±7.35 105.930±11.21 74.246±16.94 47.101±25.82 66.805±13.51 98.864±4.93 35.195±4.31 124.730±3.59 61.135±9.75 65.686±5.89 20.061±1.18 114.405±24.28 68.915±21.32 136.066±58.46

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008EI CIL_0008EI_0002 VISTA 2:155562263-156164147
CIL_0005FV CIL_0005FV_0002 CGP 2:155973279-156018279

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005783 IEA endoplasmic reticulum
GO:0005793 ISS endoplasmic reticulum-Golgi intermediate compartment
GO:0005794 IEA Golgi apparatus
GO:0006888 ISS ER to Golgi vesicle-mediated transport
GO:0008150 ND biological_process
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000123923 DHX29-202 protein_coding Danio_rerio 0.000007 57
ENSDART00000129467 DHX29-201 protein_coding Danio_rerio 0.000007 57
ENST00000279052 ERGIC3-005 retained_intron Homo_sapiens 0 544
ENST00000348547 ERGIC3-001 protein_coding Homo_sapiens 0 1687
ENST00000357394 ERGIC3-003 protein_coding Homo_sapiens 0 1620
ENST00000411577 ERGIC3-011 protein_coding Homo_sapiens 0 481
ENST00000413587 ERGIC3-017 protein_coding Homo_sapiens 0 977
ENST00000416206 ERGIC3-006 protein_coding Homo_sapiens 0 955
ENST00000438317 ERGIC3-010 nonsense_mediated_decay Homo_sapiens 0 549
ENST00000442139 ERGIC3-008 protein_coding Homo_sapiens 0 279
ENST00000447986 ERGIC3-004 retained_intron Homo_sapiens 0 1011
ENST00000451605 ERGIC3-015 protein_coding Homo_sapiens 0 418
ENST00000461043 ERGIC3-012 retained_intron Homo_sapiens 0 824
ENST00000465298 ERGIC3-020 retained_intron Homo_sapiens 0 418
ENST00000475211 ERGIC3-021 retained_intron Homo_sapiens 1e-24 117
ENST00000482338 ERGIC3-014 processed_transcript Homo_sapiens 0 647
ENST00000486268 ERGIC3-018 processed_transcript Homo_sapiens 0 549
ENST00000488384 ERGIC3-016 retained_intron Homo_sapiens 0 348
ENST00000488935 ERGIC3-009 processed_transcript Homo_sapiens 0 270
ENST00000489071 ERGIC3-019 processed_transcript Homo_sapiens 0 453
ENST00000496172 ERGIC3-013 retained_intron Homo_sapiens 0 1018

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