C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glycine C-acetyltransferase (2-amino-3-ketobutyrate-coenzyme A ligase)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000006544 Gcat-201 ENSMUSG00000006378 10090 + 15:79030874-79038348 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000006544
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000006544 3.438±0.40 5.930±0.60 3.459±0.02 2.255±0.64 2.907±0.91 3.602±1.21 2.996±0.26 25.103±1.49 24.751±5.93 2.232±0.38 2.729±0.38 2.615±0.83 15.448±17.96 0.846±0.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099H CIL_00099H_0002 VISTA 15:78863840-79464236
CIL_0008KJ CIL_0008KJ_0002 VISTA 15:78865517-79466323
CIL_0008BX CIL_0008BX_0002 VISTA 15:78873761-79474273
CIL_0008KA CIL_0008KA_0002 VISTA 15:78875821-79476550
CIL_00082J CIL_00082J_0002 VISTA 15:78908803-79509777
CIL_0008C1 CIL_0008C1_0002 VISTA 15:78918952-79520098
CIL_00082K CIL_00082K_0002 VISTA 15:78923635-79524085
CIL_0008MM CIL_0008MM_0002 VISTA 15:79023554-79624112
CIL_000409 CIL_000409_0002 CGP 15:79028212-79043558

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0005739 IEA mitochondrion
GO:0008890 IEA glycine C-acetyltransferase activity
GO:0009058 IEA biosynthetic process
GO:0019518 IEA L-threonine catabolic process to glycine
GO:0030170 IEA pyridoxal phosphate binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000007398 gcat-001 protein_coding Danio_rerio 5.04467e-44 183
ENST00000248924 GCAT-001 protein_coding Homo_sapiens 0 1452
ENST00000323205 GCAT-002 protein_coding Homo_sapiens 0 1275
ENST00000445195 GCAT-004 protein_coding Homo_sapiens 0 307
ENST00000451984 GCAT-003 protein_coding Homo_sapiens 0 460
ENST00000478203 GCAT-007 retained_intron Homo_sapiens 0 462
ENST00000603606 CTD-2302E22.5-001 processed_pseudogene Homo_sapiens 0 1101

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