C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: proteasome (prosome, macropain) 26S subunit, non-ATPase, 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000007212 Psmd2-001 ENSMUSG00000006998 10090 + 16:20651652-20663414 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000007212
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000007212 58.757±2.07 27.240±2.09 57.007±4.68 72.171±17.13 43.630±18.85 37.251±4.93 50.499±6.30 43.558±6.09 65.503±16.22 48.530±4.77 80.984±2.19 63.973±10.10 86.711±27.36 130.519±31.74

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000571 CIL_000571_0002 CGP 16:20619215-20663414
CIL_000572 CIL_000572_0002 CGP 16:20651652-20692884

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000502 IDA proteasome complex
GO:0005515 IPI protein binding
GO:0005838 IDA proteasome regulatory particle
GO:0022624 IDA proteasome accessory complex
GO:0030234 IEA enzyme regulator activity
GO:0042176 IEA regulation of protein catabolic process
GO:0050790 IEA regulation of catalytic activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000310118 PSMD2-001 protein_coding Homo_sapiens 0 3794
ENST00000417952 PSMD2-004 protein_coding Homo_sapiens 0 697
ENST00000432855 PSMD2-017 protein_coding Homo_sapiens 0 453
ENST00000433010 PSMD2-008 nonsense_mediated_decay Homo_sapiens 0 758
ENST00000435761 PSMD2-002 protein_coding Homo_sapiens 0 3149
ENST00000439383 PSMD2-003 protein_coding Homo_sapiens 0 3256
ENST00000445558 PSMD2-010 nonsense_mediated_decay Homo_sapiens 0 416
ENST00000451892 RP11-567G24.1-001 processed_pseudogene Homo_sapiens 0 3238
ENST00000459910 PSMD2-005 processed_transcript Homo_sapiens 0 660
ENST00000460628 PSMD2-014 retained_intron Homo_sapiens 0 566
ENST00000466987 PSMD2-015 retained_intron Homo_sapiens 0 250
ENST00000473991 PSMD2-019 processed_transcript Homo_sapiens 0 784
ENST00000476461 PSMD2-009 retained_intron Homo_sapiens 0 335
ENST00000487475 PSMD2-006 retained_intron Homo_sapiens 0 649
ENST00000491149 PSMD2-013 retained_intron Homo_sapiens 0 741
ENST00000492191 PSMD2-007 retained_intron Homo_sapiens 0 473
ENST00000496925 PSMD2-018 retained_intron Homo_sapiens 0 804

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