C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: KH-type splicing regulatory protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000007814 Khsrp-201 ENSMUSG00000007670 10090 - 17:57021058-57031507 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000007814
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000007814 19.047±6.82 46.867±5.46 23.176±0.72 24.470±12.25 22.669±7.70 25.180±3.44 7.579±2.40 14.382±2.86 16.002±7.30 16.701±2.62 4.735±0.84 33.939±12.48 15.079±5.96 16.111±7.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003WB CIL_0003WB_0002 CGP 17:57003405-57031507
CIL_0005GP CIL_0005GP_0003 CGP 17:57021058-57041654

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003729 IDA mRNA binding
GO:0005634 IEA nucleus
GO:0005829 TAS cytosol
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006397 IEA mRNA processing
GO:0006402 IDA mRNA catabolic process
GO:0008380 IEA RNA splicing
GO:0010494 IDA cytoplasmic stress granule
GO:0016020 IEA membrane
GO:0044822 IEA poly(A) RNA binding
GO:0051028 IEA mRNA transport
GO:2000628 IDA regulation of miRNA metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000398148 KHSRP-001 protein_coding Homo_sapiens 0 2569
ENST00000427983 KHSRPP1-001 processed_pseudogene Homo_sapiens 0 1042
ENST00000594496 KHSRP-008 protein_coding Homo_sapiens 0 708
ENST00000595112 KHSRP-007 retained_intron Homo_sapiens 0 852
ENST00000595223 KHSRP-005 protein_coding Homo_sapiens 0 614
ENST00000595548 KHSRP-003 protein_coding Homo_sapiens 0 806
ENST00000599395 KHSRP-002 protein_coding Homo_sapiens 0 623
ENST00000600480 KHSRP-009 protein_coding Homo_sapiens 0 778
ENST00000619396 KHSRP-201 protein_coding Homo_sapiens 0 2386

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