C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosphorylated adaptor for RNA export
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000008445 Phax-001 ENSMUSG00000008301 10090 + 18:56572822-56587712 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000008445
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000008445 7.814±1.92 7.376±0.34 12.972±0.56 23.548±1.83 5.583±0.39 5.077±1.03 3.533±0.34 10.881±1.54 6.944±0.47 3.472±0.50 11.080±4.29 20.065±4.43 3.792±0.25

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00041O CIL_00041O_0002 CGP 18:56432132-56572951
CIL_0000HH CIL_0000HH_0003 CGP 18:56509687-56587712
CIL_00041P CIL_00041P_0002 CGP 18:56562443-56594782

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0005634 IDA nucleus
GO:0005730 IEA nucleolus
GO:0005737 IDA cytoplasm
GO:0006408 IDA snRNA export from nucleus
GO:0015031 IEA protein transport
GO:0015643 IEA toxic substance binding
GO:0043025 IEA neuronal cell body
GO:0043231 IEA intracellular membrane-bounded organelle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000297540 PHAX-001 protein_coding Homo_sapiens 0 1009
ENST00000511371 PHAX-007 retained_intron Homo_sapiens 0 532
ENST00000513813 PHAX-005 retained_intron Homo_sapiens 0 370
ENST00000514725 PHAX-006 processed_transcript Homo_sapiens 0 414

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