C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calcium regulated heat stable protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000008537 Carhsp1-201 ENSMUSG00000008393 10090 - 16:8658587-8672153 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000008537
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000008537 70.480±14.62 243.030±54.35 23.891±1.86 44.877±27.14 67.910±13.29 108.950±4.85 11.398±1.93 29.005±1.74 56.863±19.83 60.179±8.78 2.935±0.75 142.124±49.72 28.830±8.91 25.155±13.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000EW CIL_0000EW_0002 CGP 16:8637674-8672153
CIL_0000EV CIL_0000EV_0002 CGP 16:8658587-8792308

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000177 IDA cytoplasmic exosome (RNase complex)
GO:0003677 IEA DNA binding
GO:0003730 ISS mRNA 3'-UTR binding
GO:0005515 IPI protein binding
GO:0005829 IDA cytosol
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0043186 IDA P granule
GO:0043488 IMP regulation of mRNA stability

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000311052 CARHSP1-002 protein_coding Homo_sapiens 0 676
ENST00000396593 CARHSP1-001 protein_coding Homo_sapiens 0 680
ENST00000561530 CARHSP1-007 protein_coding Homo_sapiens 0 664
ENST00000565287 CARHSP1-004 protein_coding Homo_sapiens 0 490
ENST00000567554 CARHSP1-012 protein_coding Homo_sapiens 0 601
ENST00000567908 CARHSP1-008 protein_coding Homo_sapiens 0 468
ENST00000568117 CARHSP1-010 protein_coding Homo_sapiens 0 422
ENST00000568968 CARHSP1-013 protein_coding Homo_sapiens 0 394
ENST00000570125 CARHSP1-006 protein_coding Homo_sapiens 0 462
ENST00000610831 CARHSP1-201 protein_coding Homo_sapiens 0 684
ENST00000611932 CARHSP1-202 protein_coding Homo_sapiens 0 682
ENST00000614449 CARHSP1-203 protein_coding Homo_sapiens 0 682
ENST00000618335 CARHSP1-204 protein_coding Homo_sapiens 0 680
ENST00000619881 CARHSP1-205 protein_coding Homo_sapiens 0 686

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