C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Hermansky-Pudlak syndrome 5 homolog (human)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000014562 Hps5-001 ENSMUSG00000014418 10090 - 7:46760466-46796027 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000014562
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000014562 1.488±0.05 2.782±0.81 1.330±0.00 1.316±0.23 2.301±0.29 2.452±0.50 0.392±0.03 2.030±0.16 0.772±0.25 1.885±0.00 0.824±0.23 1.760±0.60 2.315±0.81 1.933±1.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00041D CIL_00041D_0003 CGP 7:46760466-46823800

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0006996 IMP organelle organization
GO:0007596 IMP blood coagulation
GO:0031084 IEA BLOC-2 complex
GO:0043473 IMP pigmentation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000349215 HPS5-001 protein_coding Homo_sapiens 0 3265
ENST00000352460 HPS5-006 processed_transcript Homo_sapiens 0 523
ENST00000396253 HPS5-002 protein_coding Homo_sapiens 0 3105
ENST00000399287 HPS5-004 retained_intron Homo_sapiens 0 298
ENST00000438420 HPS5-005 protein_coding Homo_sapiens 0 3105
ENST00000531848 HPS5-003 protein_coding Homo_sapiens 0 1568
ENST00000537258 HPS5-007 protein_coding Homo_sapiens 0 802
ENST00000543728 HPS5-010 processed_transcript Homo_sapiens 4.99997e-41 171
ENST00000544218 HPS5-009 protein_coding Homo_sapiens 0 198
ENST00000589545 HPS5-012 processed_transcript Homo_sapiens 1e-39 167

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