C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Hermansky-Pudlak syndrome 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000349215 HPS5-001 ENSG00000110756 9606 - 11:18279059-18322174 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainKidneyLiverLungMuscleOvaryPlacentaTestisENST00000349215
Transcript ID Adipose Brain Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000349215 0.896±0.00 2.187±0.00 1.530±0.39 1.053±0.00 1.822±0.60 0.579±0.00 1.493±0.67 1.881±0.92 3.987±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00041D CIL_00041D_0002 CGP 11:18278668-18367044

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0006996 IEA organelle organization
GO:0007596 IEA blood coagulation
GO:0031084 IPI BLOC-2 complex
GO:0043473 IEA pigmentation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000014562 Hps5-001 protein_coding Mus_musculus 0 3265
ENSMUST00000107654 Hps5-002 protein_coding Mus_musculus 0 3265
ENSMUST00000107653 Hps5-003 protein_coding Mus_musculus 0 2002
ENSMUST00000145776 Hps5-004 retained_intron Mus_musculus 0 1729
ENSMUST00000142663 Hps5-005 nonsense_mediated_decay Mus_musculus 0 1729
ENSMUST00000152759 Hps5-008 protein_coding Mus_musculus 0 710
ENSMUST00000138480 Hps5-012 processed_transcript Mus_musculus 0 632
ENSMUST00000157026 Hps5-010 retained_intron Mus_musculus 0 532
ENSMUST00000153789 Hps5-007 protein_coding Mus_musculus 0 521
ENSMUST00000123725 Hps5-009 protein_coding Mus_musculus 0 464
ENSMUST00000124675 Hps5-006 processed_transcript Mus_musculus 0 298

Loading