C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Hermansky-Pudlak syndrome 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000396253 HPS5-002 ENSG00000110756 9606 - 11:18278668-18322174 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000396253
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000396253 0.451±0.00 0.744±0.06 1.251±0.00 1.622±0.00 0.520±0.00 0.625±0.00 1.189±0.00 1.032±0.00 0.249±0.00 2.204±0.58 1.298±0.62 5.040±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00041D CIL_00041D_0002 CGP 11:18278668-18367044

Gene Ontology

GO IDEvidence TypeGO Description
GO:0031084 IPI BLOC-2 complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000014562 Hps5-001 protein_coding Mus_musculus 0 3105
ENSMUST00000107654 Hps5-002 protein_coding Mus_musculus 0 3105
ENSMUST00000107653 Hps5-003 protein_coding Mus_musculus 0 2002
ENSMUST00000145776 Hps5-004 retained_intron Mus_musculus 0 1568
ENSMUST00000142663 Hps5-005 nonsense_mediated_decay Mus_musculus 0 1568
ENSMUST00000138480 Hps5-012 processed_transcript Mus_musculus 0 632
ENSMUST00000152759 Hps5-008 protein_coding Mus_musculus 0 549
ENSMUST00000157026 Hps5-010 retained_intron Mus_musculus 0 532
ENSMUST00000153789 Hps5-007 protein_coding Mus_musculus 0 521
ENSMUST00000123725 Hps5-009 protein_coding Mus_musculus 0 303
ENSMUST00000124675 Hps5-006 processed_transcript Mus_musculus 8e-30 137

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