C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00041D_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000071062-ENSDARG00000026701 CGP 7955 25:3115128-3183812
GeneTranscriptPositionBiotype
ENSDARG00000026701 (gtf2h1)
general transcription factor II H, polypeptide 1 		ENSDART00000032390 (gtf2h1-201) 3163552-3183812 protein_coding
ENSDARG00000071062 (hps5)
Hermansky-Pudlak syndrome 5 		ENSDART00000104832 (hps5-201) 3115138-3159121 protein_coding
ENSDART00000104835 (hps5-001) 3115128-3159102 protein_coding
ENSDART00000148696 (hps5-002) 3156164-3159094 retained_intron
CIL_00041D_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000110756-ENSG00000110768 CGP 9606 11:18278668-18367044
GeneTranscriptPositionBiotype
ENSG00000110756 (HPS5)
Hermansky-Pudlak syndrome 5 		ENST00000349215 (HPS5-001) 18279059-18322174 protein_coding
ENST00000352460 (HPS5-006) 18281914-18296101 processed_transcript
ENST00000396253 (HPS5-002) 18278668-18322174 protein_coding
ENST00000399287 (HPS5-004) 18311517-18322178 retained_intron
ENST00000438420 (HPS5-005) 18279059-18322174 protein_coding
ENST00000531848 (HPS5-003) 18296162-18322198 protein_coding
ENST00000537258 (HPS5-007) 18279618-18286914 protein_coding
ENST00000543728 (HPS5-010) 18287891-18296045 processed_transcript
ENST00000544218 (HPS5-009) 18285373-18296045 protein_coding
ENST00000545561 (HPS5-008) 18283793-18291942 retained_intron
ENST00000589545 (HPS5-012) 18311956-18322088 processed_transcript
ENSG00000110768 (GTF2H1)
general transcription factor IIH, polypeptide 1, 62kDa 		ENST00000265963 (GTF2H1-001) 18322596-18367044 protein_coding
ENST00000418116 (GTF2H1-017) 18322557-18360770 retained_intron
ENST00000453096 (GTF2H1-002) 18322295-18366261 protein_coding
ENST00000524753 (GTF2H1-014) 18338217-18348831 protein_coding
ENST00000525831 (GTF2H1-006) 18322569-18335884 protein_coding
ENST00000526282 (GTF2H1-013) 18352098-18358642 retained_intron
ENST00000526461 (GTF2H1-007) 18322568-18333454 retained_intron
ENST00000526630 (GTF2H1-011) 18351572-18365898 protein_coding
ENST00000528427 (GTF2H1-012) 18352018-18358102 retained_intron
ENST00000530496 (GTF2H1-010) 18347104-18366275 protein_coding
ENST00000531757 (GTF2H1-004) 18322547-18335904 processed_transcript
ENST00000532227 (GTF2H1-008) 18322582-18333609 retained_intron
ENST00000534213 (GTF2H1-005) 18322567-18333183 processed_transcript
ENST00000534641 (GTF2H1-003) 18322567-18366813 protein_coding
ENST00000543932 (GTF2H1-018) 18332662-18341608 retained_intron
ENST00000607664 (GTF2H1-019) 18341409-18341958 retained_intron
CIL_00041D_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000014418-ENSMUSG00000006599 CGP 10090 7:46760466-46823800
GeneTranscriptPositionBiotype
ENSMUSG00000006599 (Gtf2h1)
general transcription factor II H, polypeptide 1 		ENSMUST00000006774 (Gtf2h1-001) 46796103-46823800 protein_coding
ENSMUST00000107644 (Gtf2h1-002) 46796671-46823275 protein_coding
ENSMUST00000128420 (Gtf2h1-003) 46801687-46822909 nonsense_mediated_decay
ENSMUST00000144708 (Gtf2h1-004) 46808452-46815418 retained_intron
ENSMUST00000165031 (Gtf2h1-005) 46796114-46805027 protein_coding
ENSMUSG00000014418 (Hps5)
Hermansky-Pudlak syndrome 5 homolog (human) 		ENSMUST00000014562 (Hps5-001) 46760466-46796027 protein_coding
ENSMUST00000107653 (Hps5-003) 46760472-46795881 protein_coding
ENSMUST00000107654 (Hps5-002) 46760466-46795999 protein_coding
ENSMUST00000123725 (Hps5-009) 46788292-46795703 protein_coding
ENSMUST00000124675 (Hps5-006) 46789074-46791076 processed_transcript
ENSMUST00000130365 (Hps5-011) 46764902-46771987 protein_coding
ENSMUST00000138480 (Hps5-012) 46761240-46769020 processed_transcript
ENSMUST00000142663 (Hps5-005) 46760466-46795678 nonsense_mediated_decay
ENSMUST00000143627 (Hps5-013) 46766982-46768463 retained_intron
ENSMUST00000145776 (Hps5-004) 46760979-46795678 retained_intron
ENSMUST00000152759 (Hps5-008) 46786514-46796064 protein_coding
ENSMUST00000153789 (Hps5-007) 46762944-46774916 protein_coding
ENSMUST00000157026 (Hps5-010) 46775839-46778422 retained_intron
ENSMUSG00000087298 (Gm9392)
predicted pseudogene 9392 		ENSMUST00000119337 (Gm9392-001) 46820864-46821417 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00041D_0001ENSDARG00000026701ENSDART00000032390ENSDARG00000071062ENSDART00000104832ENSDART00000104835ENSDART00000148696CIL_00041D_0002ENSG00000110756ENST00000349215ENST00000352460ENST00000396253ENST00000399287ENST00000438420ENST00000531848ENST00000537258ENST00000543728ENST00000544218ENST00000545561ENST00000589545ENSG00000110768ENST00000265963ENST00000418116ENST00000453096ENST00000524753ENST00000525831ENST00000526282ENST00000526461ENST00000526630ENST00000528427ENST00000530496ENST00000531757ENST00000532227ENST00000534213ENST00000534641ENST00000543932ENST00000607664CIL_00041D_0003ENSMUSG00000006599ENSMUST00000006774ENSMUST00000107644ENSMUST00000128420ENSMUST00000144708ENSMUST00000165031ENSMUSG00000014418ENSMUST00000014562ENSMUST00000107653ENSMUST00000107654ENSMUST00000123725ENSMUST00000124675ENSMUST00000130365ENSMUST00000138480ENSMUST00000142663ENSMUST00000143627ENSMUST00000145776ENSMUST00000152759ENSMUST00000153789ENSMUST00000157026ENSMUSG00000087298ENSMUST00000119337
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00041D_0001ENSDARG00000026701ENSDART00000032390ENSDARG00000071062ENSDART00000104832ENSDART00000104835CIL_00041D_0002ENSG00000110756ENST00000349215ENST00000396253ENST00000438420ENST00000531848ENST00000544218ENST00000545561ENSG00000110768ENST00000265963ENST00000418116ENST00000453096ENST00000524753ENST00000534641ENST00000607664CIL_00041D_0003ENSMUSG00000006599ENSMUST00000006774ENSMUST00000107644ENSMUST00000128420ENSMUST00000165031ENSMUSG00000014418ENSMUST00000014562ENSMUST00000107653ENSMUST00000107654ENSMUST00000138480ENSMUST00000142663ENSMUST00000145776ENSMUST00000153789ENSMUSG00000087298ENSMUST00000119337
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000026701 ENSDART00000032390 N/A N/A N/A 0.976±0.68 N/A N/A 1.474±0.14 1.200±0.83 0.286±0.00 N/A 0.714±0.00 N/A N/A N/A
ENSDARG00000071062 ENSDART00000104832 N/A N/A N/A 0.398±0.23 N/A N/A 7.071±5.20 15.287±4.11 N/A N/A 1.104±0.00 N/A N/A N/A
ENSDART00000104835 N/A N/A N/A 0.594±0.38 N/A N/A 2.431±0.64 2.665±0.00 0.703±0.00 N/A 2.833±0.00 N/A N/A N/A
ENSDART00000148696 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000110756 ENST00000349215 0.896±0.00 N/A N/A 2.187±0.00 N/A N/A N/A 1.530±0.39 1.053±0.00 1.822±0.60 0.579±0.00 1.493±0.67 1.881±0.92 3.987±0.00
ENST00000352460 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000396253 0.451±0.00 N/A N/A 0.744±0.06 1.251±0.00 1.622±0.00 0.520±0.00 0.625±0.00 1.189±0.00 1.032±0.00 0.249±0.00 2.204±0.58 1.298±0.62 5.040±0.00
ENST00000399287 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000438420 0.510±0.00 2.505±0.00 N/A N/A 2.266±0.00 1.499±0.00 0.822±0.00 2.022±0.00 8.843±0.00 N/A N/A 1.886±0.29 3.282±2.38 8.537±0.00
ENST00000531848 N/A N/A N/A 1.318±0.00 2.081±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000537258 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000543728 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000544218 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.150±0.00 N/A N/A N/A
ENST00000545561 N/A N/A N/A 2.103±0.00 N/A 2.062±0.00 N/A 3.626±0.00 N/A N/A N/A 3.924±0.00 N/A N/A
ENST00000589545 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000110768 ENST00000265963 2.241±0.00 3.096±0.00 N/A 4.000±1.52 3.008±1.46 3.139±0.00 1.628±1.08 3.434±2.61 2.224±0.46 0.682±0.00 1.045±0.00 4.527±2.40 2.664±0.58 6.054±2.16
ENST00000418116 N/A N/A 1.000±0.00 2.941±0.00 5.532±0.00 3.329±0.00 2.096±0.00 2.855±0.00 5.001±0.00 4.780±0.00 1.643±0.00 5.520±0.00 N/A N/A
ENST00000453096 N/A 1.449±0.00 0.553±0.00 N/A N/A N/A 1.774±0.00 1.473±0.00 N/A 1.086±0.00 N/A N/A 3.054±0.00 4.168±0.00
ENST00000524753 N/A N/A N/A 2.934±0.00 N/A N/A N/A N/A N/A 2.422±0.00 N/A N/A N/A N/A
ENST00000525831 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526282 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526461 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526630 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000528427 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530496 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531757 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532227 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000534213 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000534641 2.698±0.00 2.236±0.00 N/A 3.302±0.00 2.538±0.00 2.081±0.00 1.510±0.75 2.419±0.00 1.974±0.00 2.267±0.00 2.486±0.00 4.997±2.28 3.211±0.84 11.225±5.19
ENST00000543932 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000607664 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.225±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000006599 ENSMUST00000006774 5.993±0.37 11.382±1.79 11.732±0.54 13.600±2.80 4.273±1.35 6.076±0.88 2.856±0.49 6.636±0.24 7.883±4.84 5.078±0.68 4.224±0.93 6.296±1.15 23.072±4.81 16.385±5.87
ENSMUST00000107644 N/A N/A N/A 7.820±0.00 1.315±0.00 N/A 0.532±0.00 N/A N/A N/A N/A 4.774±2.32 22.019±6.59 25.842±0.00
ENSMUST00000128420 N/A N/A N/A N/A 2.081±0.00 N/A N/A N/A N/A N/A 1.598±0.00 N/A N/A N/A
ENSMUST00000144708 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000165031 N/A 14.511±1.06 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.190±0.00 N/A N/A
ENSMUSG00000014418 ENSMUST00000014562 1.488±0.05 2.782±0.81 1.330±0.00 1.316±0.23 2.301±0.29 2.452±0.50 0.392±0.03 2.030±0.16 0.772±0.25 1.885±0.00 0.824±0.23 1.760±0.60 2.315±0.81 1.933±1.20
ENSMUST00000107653 1.921±0.60 N/A 1.141±0.00 N/A 1.564±0.54 1.407±0.00 0.411±0.10 2.432±0.41 0.698±0.17 1.232±0.00 0.994±0.36 1.626±0.47 2.087±0.81 N/A
ENSMUST00000107654 2.177±0.47 N/A 2.185±1.13 0.988±0.16 2.708±0.56 2.285±0.57 0.844±0.00 4.675±0.82 1.464±0.77 2.717±1.01 0.993±0.29 3.258±2.18 5.117±1.26 2.166±0.78
ENSMUST00000123725 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000124675 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130365 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138480 N/A N/A N/A 4.326±0.00 N/A N/A N/A N/A N/A N/A N/A 4.794±0.00 N/A N/A
ENSMUST00000142663 N/A N/A N/A 4.111±1.40 N/A N/A N/A N/A 0.481±0.03 1.606±0.00 N/A 1.914±0.00 2.316±0.40 N/A
ENSMUST00000143627 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145776 2.096±0.49 1.146±0.00 1.966±0.09 1.278±0.14 1.724±0.48 2.850±0.41 0.532±0.10 2.629±0.94 0.955±0.12 2.247±0.52 0.600±0.13 1.700±0.46 2.792±0.71 N/A
ENSMUST00000152759 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153789 N/A N/A N/A N/A N/A N/A N/A N/A 1.405±0.16 N/A N/A N/A N/A N/A
ENSMUST00000157026 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000087298 ENSMUST00000119337 0.550±0.12 0.596±0.09 1.332±0.25 1.339±0.75 1.624±0.29 0.948±0.27 0.449±0.22 1.063±0.37 1.026±0.47 1.384±0.32 0.621±0.09 1.042±0.28 1.112±0.46 0.702±0.39

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