C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CAS1 domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000015333 Casd1-001 ENSMUSG00000015189 10090 + 6:4600840-4643381 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000015333
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000015333 8.417±3.94 11.658±5.60 13.032±0.72 14.736±4.44 6.726±4.20 14.058±1.42 4.290±1.05 7.033±1.68 6.114±1.59 15.858±1.24 5.608±0.50 13.782±4.77 9.184±4.46 1.107±0.47

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00082O CIL_00082O_0002 VISTA 6:4156170-4759324
CIL_0007XR CIL_0007XR_0002 VISTA 6:4183463-4785322
CIL_00095G CIL_00095G_0002 VISTA 6:4188993-4790635
CIL_0008ZR CIL_0008ZR_0002 VISTA 6:4253537-4855066
CIL_0004SO CIL_0004SO_0003 CGP 6:4504814-4643381
CIL_0004SP CIL_0004SP_0003 CGP 6:4600840-4747204

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000297273 CASD1-001 protein_coding Homo_sapiens 0 3459
ENST00000417387 CASD1-006 nonsense_mediated_decay Homo_sapiens 0 424
ENST00000443644 CASD1-005 nonsense_mediated_decay Homo_sapiens 0 612
ENST00000447923 CASD1-004 protein_coding Homo_sapiens 0 614
ENST00000471944 CASD1-002 retained_intron Homo_sapiens 0 239
ENST00000489196 CASD1-003 retained_intron Homo_sapiens 0 239
ENST00000618861 CASD1-201 protein_coding Homo_sapiens 0 3402

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