C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007XR_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
mm398 VISTA 9606 7:94067785-94669696
GeneTranscriptPositionBiotype
ENSG00000127990 (SGCE)
sarcoglycan, epsilon 		ENST00000265735 (SGCE-001) 94585230-94656209 protein_coding
ENST00000415788 (SGCE-008) 94588311-94656186 protein_coding
ENST00000425444 (SGCE-006) 94623328-94656173 nonsense_mediated_decay
ENST00000428696 (SGCE-004) 94585412-94656098 protein_coding
ENST00000437425 (SGCE-002) 94585250-94656166 protein_coding
ENST00000445866 (SGCE-003) 94585248-94656124 protein_coding
ENST00000447873 (SGCE-005) 94585257-94656166 protein_coding
ENST00000450385 (SGCE-007) 94618804-94656127 nonsense_mediated_decay
ENST00000462731 (SGCE-009) 94600625-94603407 retained_intron
ENST00000472326 (SGCE-010) 94585470-94599137 retained_intron
ENST00000522045 (SGCE-011) 94585230-94600740 protein_coding
ENSG00000127995 (CASD1)
CAS1 domain containing 1 		ENST00000297273 (CASD1-001) 94509798-94557019 protein_coding
ENST00000417387 (CASD1-006) 94510071-94528250 nonsense_mediated_decay
ENST00000443644 (CASD1-005) 94510068-94535522 nonsense_mediated_decay
ENST00000447923 (CASD1-004) 94509219-94533758 protein_coding
ENST00000471944 (CASD1-002) 94551733-94556966 retained_intron
ENST00000489196 (CASD1-003) 94553852-94556966 retained_intron
ENST00000618861 (CASD1-201) 94509858-94557014 protein_coding
ENSG00000164692 (COL1A2)
collagen, type I, alpha 2 		ENST00000297268 (COL1A2-001) 94394561-94431232 protein_coding
ENST00000461525 (COL1A2-005) 94417772-94421400 retained_intron
ENST00000464916 (COL1A2-003) 94427312-94430367 retained_intron
ENST00000467931 (COL1A2-006) 94419453-94421046 retained_intron
ENST00000469732 (COL1A2-008) 94423988-94425787 retained_intron
ENST00000473573 (COL1A2-007) 94414220-94422040 retained_intron
ENST00000478215 (COL1A2-009) 94425270-94426729 retained_intron
ENST00000481570 (COL1A2-002) 94422471-94430688 retained_intron
ENST00000488121 (COL1A2-011) 94426510-94427492 retained_intron
ENST00000488298 (COL1A2-012) 94413709-94416810 retained_intron
ENST00000492110 (COL1A2-010) 94426783-94427507 retained_intron
ENST00000497316 (COL1A2-004) 94417464-94423118 retained_intron
ENST00000620463 (COL1A2-201) 94394914-94430703 protein_coding
ENSG00000236938 (AC003092.2)
 ENST00000411946 (AC003092.2-001) 94071759-94077157 lincRNA
ENSG00000242265 (PEG10)
paternally expressed 10 		ENST00000465184 (PEG10-004) 94664735-94669180 processed_transcript
ENST00000482108 (PEG10-001) 94656325-94669695 protein_coding
ENST00000488574 (PEG10-002) 94656370-94665698 protein_coding
ENST00000493935 (PEG10-003) 94656370-94669637 processed_transcript
ENST00000612748 (PEG10-006) 94656370-94665698 protein_coding
ENST00000612941 (PEG10-008) 94656546-94669692 protein_coding
ENST00000613043 (PEG10-009) 94656384-94663650 protein_coding
ENST00000615790 (PEG10-007) 94656546-94669692 protein_coding
ENST00000617526 (PEG10-005) 94656546-94669692 protein_coding
CIL_0007XR_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
mm398 VISTA 10090 6:4183463-4785322
GeneTranscriptPositionBiotype
ENSMUSG00000004631 (Sgce)
sarcoglycan, epsilon 		ENSMUST00000004750 (Sgce-201) 4674352-4747204 protein_coding
ENSMUST00000090686 (Sgce-007) 4674384-4747157 protein_coding
ENSMUST00000101677 (Sgce-202) 4674352-4747204 protein_coding
ENSMUST00000115577 (Sgce-203) 4674352-4747204 protein_coding
ENSMUST00000115579 (Sgce-001) 4674350-4747204 protein_coding
ENSMUST00000123907 (Sgce-005) 4674508-4747037 protein_coding
ENSMUST00000126151 (Sgce-003) 4674418-4747019 protein_coding
ENSMUST00000128109 (Sgce-006) 4688612-4747080 processed_transcript
ENSMUST00000130428 (Sgce-009) 4677931-4689699 processed_transcript
ENSMUST00000133306 (Sgce-004) 4674418-4747019 protein_coding
ENSMUST00000139029 (Sgce-008) 4691600-4747063 processed_transcript
ENSMUST00000153284 (Sgce-002) 4674360-4730126 processed_transcript
ENSMUSG00000015189 (Casd1)
CAS1 domain containing 1 		ENSMUST00000015333 (Casd1-001) 4600840-4643381 protein_coding
ENSMUST00000141359 (Casd1-003) 4601203-4621132 protein_coding
ENSMUST00000153963 (Casd1-002) 4601146-4608748 processed_transcript
ENSMUST00000181734 (Casd1-004) 4601145-4635886 protein_coding
ENSMUSG00000029661 (Col1a2)
collagen, type I, alpha 2 		ENSMUST00000031668 (Col1a2-001) 4505493-4541543 protein_coding
ENSMUST00000124686 (Col1a2-008) 4535781-4536623 retained_intron
ENSMUST00000132029 (Col1a2-003) 4505702-4515019 retained_intron
ENSMUST00000138511 (Col1a2-002) 4505702-4514529 retained_intron
ENSMUST00000139201 (Col1a2-007) 4534904-4535885 retained_intron
ENSMUST00000141483 (Col1a2-005) 4504814-4516419 protein_coding
ENSMUST00000148864 (Col1a2-004) 4520624-4529452 retained_intron
ENSMUST00000155687 (Col1a2-006) 4530156-4535057 retained_intron
ENSMUSG00000092035 (Peg10)
paternally expressed 10 		ENSMUST00000166678 (Peg10-201) 4747306-4760514 protein_coding
ENSMUST00000175823 (Peg10-002) 4747306-4755327 protein_coding
ENSMUST00000176204 (Peg10-001) 4747306-4760517 protein_coding
ENSMUST00000176551 (Peg10-003) 4755327-4760517 protein_coding
ENSMUSG00000097513 (Gm26696)
predicted gene, 26696 		ENSMUST00000181941 (Gm26696-001) 4593804-4596651 lincRNA
ENSMUSG00000098779 (Gm8602)
predicted gene 8602 		ENSMUST00000184045 (Gm8602-001) 4359027-4359507 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007XR_0001ENSG00000127990ENST00000265735ENST00000415788ENST00000428696ENST00000437425ENST00000445866ENST00000447873ENST00000462731ENST00000472326ENSG00000127995ENST00000297273ENST00000471944ENST00000489196ENST00000618861ENSG00000164692ENST00000297268ENST00000473573ENST00000497316ENST00000620463ENSG00000236938ENST00000411946ENSG00000242265ENST00000465184ENST00000482108ENST00000488574ENST00000493935ENST00000612941CIL_0007XR_0002ENSMUSG00000004631ENSMUST00000004750ENSMUST00000090686ENSMUST00000101677ENSMUST00000115577ENSMUST00000115579ENSMUST00000123907ENSMUST00000130428ENSMUST00000133306ENSMUST00000153284ENSMUSG00000015189ENSMUST00000015333ENSMUSG00000029661ENSMUST00000031668ENSMUST00000138511ENSMUST00000141483ENSMUSG00000092035ENSMUST00000166678ENSMUST00000175823ENSMUST00000176204ENSMUST00000176551ENSMUSG00000097513ENSMUST00000181941ENSMUSG00000098779ENSMUST00000184045
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000127990 ENST00000265735 7.749±0.00 4.497±0.00 2.234±0.00 2.778±0.64 4.120±1.22 10.528±9.01 1.373±0.53 2.328±1.01 3.018±0.90 6.061±0.03 1.056±0.00 23.803±12.62 15.115±0.77 16.642±0.00
ENST00000415788 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.745±0.00 N/A N/A
ENST00000425444 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000428696 N/A N/A N/A 4.056±0.50 2.713±0.00 0.422±0.00 1.777±0.00 4.000±0.00 N/A 5.787±0.00 0.948±0.00 N/A N/A N/A
ENST00000437425 3.052±0.00 7.291±0.00 N/A 5.059±0.00 5.452±0.00 15.707±0.00 2.847±0.00 6.091±0.00 2.023±0.00 9.136±0.00 0.275±0.00 10.787±10.06 7.897±0.63 4.792±0.00
ENST00000445866 N/A N/A N/A N/A 2.106±0.00 N/A 1.740±0.00 1.051±0.00 2.586±1.09 N/A 0.934±0.00 N/A N/A N/A
ENST00000447873 2.886±0.00 4.014±0.00 N/A N/A 2.589±0.00 0.653±0.00 N/A N/A N/A N/A N/A 5.465±0.00 5.450±1.66 6.400±0.00
ENST00000450385 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000462731 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.646±0.00 27.264±0.00 12.954±0.00
ENST00000472326 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.518±0.00 N/A 9.619±0.00
ENST00000522045 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000127995 ENST00000297273 2.951±0.00 3.163±0.00 N/A 4.862±0.77 2.971±0.90 5.559±0.28 5.106±0.00 1.502±0.00 2.359±1.05 1.683±0.16 1.822±0.00 3.296±1.77 1.601±1.17 5.547±0.93
ENST00000417387 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000443644 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000447923 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471944 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.491±0.00 N/A 1.295±0.00 N/A N/A
ENST00000489196 N/A N/A 0.819±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.124±0.00
ENST00000618861 N/A N/A N/A 4.222±0.00 N/A N/A 0.924±0.00 N/A N/A N/A N/A N/A 0.710±0.00 N/A
ENSG00000164692 ENST00000297268 12.899±0.00 18.811±0.00 2.095±0.00 0.492±0.06 58.405±5.26 13.454±1.61 5.100±0.44 12.889±0.00 1.887±0.00 13.803±3.56 3.415±0.00 132.611±101.36 114.140±32.23 36.541±14.37
ENST00000461525 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464916 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467931 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469732 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473573 N/A N/A 9.120±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478215 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481570 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488121 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488298 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492110 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497316 N/A N/A N/A 1.496±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000620463 80.291±0.00 96.884±0.00 3.734±0.00 1.538±0.87 152.479±64.49 46.730±17.62 21.229±14.13 24.541±19.38 37.950±26.02 61.967±40.02 9.935±6.24 258.471±194.71 232.823±65.08 90.358±60.99
ENSG00000236938 ENST00000411946 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.126±0.00 0.134±0.00
ENSG00000242265 ENST00000465184 N/A 1.703±0.00 N/A 31.246±0.00 8.425±0.00 7.917±0.00 N/A 3.741±0.00 0.323±0.00 N/A N/A 55.130±29.19 1133.820±0.00 61.095±34.67
ENST00000482108 N/A N/A N/A 8.533±4.78 1.369±0.00 0.374±0.00 N/A N/A 2.780±0.00 0.855±0.27 0.614±0.00 8.042±0.55 125.028±0.00 8.685±0.00
ENST00000488574 N/A N/A 0.604±0.00 N/A N/A 0.310±0.00 0.086±0.00 N/A 1.251±0.00 N/A 0.277±0.00 N/A N/A N/A
ENST00000493935 N/A N/A N/A N/A N/A N/A N/A N/A 0.378±0.00 5.888±0.00 N/A 41.128±14.63 N/A 59.512±0.00
ENST00000612748 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000612941 0.783±0.00 1.049±0.00 1.061±0.00 8.824±1.31 4.068±0.48 3.207±2.94 0.240±0.09 1.535±0.55 0.758±0.51 2.906±0.25 0.145±0.00 15.129±5.15 159.702±39.31 13.998±6.66
ENST00000613043 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000615790 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000617526 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000004631 ENSMUST00000004750 N/A N/A N/A 0.722±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000090686 4.353±0.00 2.238±0.68 N/A 6.651±0.27 2.136±0.47 0.916±0.24 1.277±0.00 0.619±0.15 0.298±0.19 N/A 0.441±0.15 3.700±0.71 6.356±2.43 0.657±0.41
ENSMUST00000101677 N/A 2.520±0.61 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.629±0.00
ENSMUST00000115577 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.361±0.05 N/A N/A N/A
ENSMUST00000115579 24.088±7.49 8.541±1.71 32.977±0.52 3.510±0.21 11.874±1.29 4.369±0.91 5.949±0.58 3.620±0.79 5.260±4.53 18.994±2.27 2.020±0.48 17.489±3.28 21.282±16.33 2.259±0.65
ENSMUST00000123907 N/A N/A N/A 1.425±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 4.986±0.70 N/A
ENSMUST00000126151 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000128109 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130428 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 34.413±0.00 N/A N/A
ENSMUST00000133306 N/A 3.494±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.700±0.61 5.529±1.01 0.554±0.00
ENSMUST00000139029 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153284 N/A N/A N/A N/A 6.683±0.00 1.396±0.00 N/A 1.956±0.00 1.828±0.00 N/A 0.727±0.27 13.661±0.00 17.451±9.90 N/A
ENSMUSG00000015189 ENSMUST00000015333 8.417±3.94 11.658±5.60 13.032±0.72 14.736±4.44 6.726±4.20 14.058±1.42 4.290±1.05 7.033±1.68 6.114±1.59 15.858±1.24 5.608±0.50 13.782±4.77 9.184±4.46 1.107±0.47
ENSMUST00000141359 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153963 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000181734 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000029661 ENSMUST00000031668 139.585±122.17 22.421±1.80 512.787±17.02 22.251±15.79 205.415±81.10 32.780±24.31 14.043±9.86 25.245±3.52 6.616±6.47 52.637±37.59 28.950±4.12 137.778±71.68 141.615±0.12 5.597±4.12
ENSMUST00000124686 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132029 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138511 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 341.659±0.00 N/A N/A
ENSMUST00000139201 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141483 N/A 27.895±4.23 N/A N/A N/A 48.306±0.00 25.359±0.00 19.781±2.64 2.709±0.70 N/A N/A 289.930±48.24 N/A N/A
ENSMUST00000148864 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155687 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000092035 ENSMUST00000166678 1.019±0.08 44.424±8.55 0.944±0.08 16.730±7.10 0.405±0.03 0.146±0.07 0.084±0.00 0.077±0.07 3.308±2.22 0.456±0.09 0.052±0.03 N/A 278.619±206.86 N/A
ENSMUST00000175823 N/A N/A N/A N/A N/A 0.183±0.00 N/A 0.160±0.00 0.053±0.02 N/A 0.177±0.06 40.710±0.00 1872.315±653.84 6.022±0.00
ENSMUST00000176204 N/A N/A 0.572±0.29 5.420±0.00 N/A 0.127±0.05 0.031±0.00 0.046±0.02 1.431±0.81 N/A 0.050±0.03 N/A 90.099±29.60 N/A
ENSMUST00000176551 1.703±0.93 39.504±13.25 1.711±0.25 11.106±6.68 1.557±0.65 0.313±0.13 0.280±0.07 0.135±0.07 4.202±4.58 0.445±0.23 0.171±0.11 13.162±5.27 624.471±440.13 5.705±2.67
ENSMUSG00000097513 ENSMUST00000181941 0.015±0.00 0.093±0.05 0.013±0.00 0.015±0.00 0.027±0.00 N/A N/A 0.029±0.01 0.019±0.02 0.047±0.02 0.014±0.00 0.117±0.09 0.019±0.01 0.279±0.17
ENSMUSG00000098779 ENSMUST00000184045 N/A 0.058±0.00 N/A N/A 0.131±0.00 N/A N/A N/A N/A N/A N/A 0.308±0.16 0.030±0.00 N/A

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