C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004SP_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000023900-ENSDARG00000012138 CGP 7955 19:41967601-42030199
GeneTranscriptPositionBiotype
ENSDARG00000012138 (sgce)
sarcoglycan, epsilon 		ENSDART00000102807 (sgce-201) 41999298-42030088 protein_coding
ENSDART00000111982 (sgce-001) 41999294-42030199 protein_coding
ENSDART00000131865 (sgce-002) 41999294-42012866 protein_coding
ENSDART00000151120 (sgce-003) 41999298-42013034 protein_coding
ENSDARG00000023900 (casd1)
CAS1 domain containing 1 		ENSDART00000049842 (casd1-201) 41967605-41994611 protein_coding
ENSDART00000138555 (casd1-001) 41967601-41994850 protein_coding
CIL_0004SP_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000127995-ENSG00000127990 CGP 9606 7:94509219-94656209
GeneTranscriptPositionBiotype
ENSG00000127990 (SGCE)
sarcoglycan, epsilon 		ENST00000265735 (SGCE-001) 94585230-94656209 protein_coding
ENST00000415788 (SGCE-008) 94588311-94656186 protein_coding
ENST00000425444 (SGCE-006) 94623328-94656173 nonsense_mediated_decay
ENST00000428696 (SGCE-004) 94585412-94656098 protein_coding
ENST00000437425 (SGCE-002) 94585250-94656166 protein_coding
ENST00000445866 (SGCE-003) 94585248-94656124 protein_coding
ENST00000447873 (SGCE-005) 94585257-94656166 protein_coding
ENST00000450385 (SGCE-007) 94618804-94656127 nonsense_mediated_decay
ENST00000462731 (SGCE-009) 94600625-94603407 retained_intron
ENST00000472326 (SGCE-010) 94585470-94599137 retained_intron
ENST00000522045 (SGCE-011) 94585230-94600740 protein_coding
ENSG00000127995 (CASD1)
CAS1 domain containing 1 		ENST00000297273 (CASD1-001) 94509798-94557019 protein_coding
ENST00000417387 (CASD1-006) 94510071-94528250 nonsense_mediated_decay
ENST00000443644 (CASD1-005) 94510068-94535522 nonsense_mediated_decay
ENST00000447923 (CASD1-004) 94509219-94533758 protein_coding
ENST00000471944 (CASD1-002) 94551733-94556966 retained_intron
ENST00000489196 (CASD1-003) 94553852-94556966 retained_intron
ENST00000618861 (CASD1-201) 94509858-94557014 protein_coding
CIL_0004SP_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000015189-ENSMUSG00000004631 CGP 10090 6:4600840-4747204
GeneTranscriptPositionBiotype
ENSMUSG00000004631 (Sgce)
sarcoglycan, epsilon 		ENSMUST00000004750 (Sgce-201) 4674352-4747204 protein_coding
ENSMUST00000090686 (Sgce-007) 4674384-4747157 protein_coding
ENSMUST00000101677 (Sgce-202) 4674352-4747204 protein_coding
ENSMUST00000115577 (Sgce-203) 4674352-4747204 protein_coding
ENSMUST00000115579 (Sgce-001) 4674350-4747204 protein_coding
ENSMUST00000123907 (Sgce-005) 4674508-4747037 protein_coding
ENSMUST00000126151 (Sgce-003) 4674418-4747019 protein_coding
ENSMUST00000128109 (Sgce-006) 4688612-4747080 processed_transcript
ENSMUST00000130428 (Sgce-009) 4677931-4689699 processed_transcript
ENSMUST00000133306 (Sgce-004) 4674418-4747019 protein_coding
ENSMUST00000139029 (Sgce-008) 4691600-4747063 processed_transcript
ENSMUST00000153284 (Sgce-002) 4674360-4730126 processed_transcript
ENSMUSG00000015189 (Casd1)
CAS1 domain containing 1 		ENSMUST00000015333 (Casd1-001) 4600840-4643381 protein_coding
ENSMUST00000141359 (Casd1-003) 4601203-4621132 protein_coding
ENSMUST00000153963 (Casd1-002) 4601146-4608748 processed_transcript
ENSMUST00000181734 (Casd1-004) 4601145-4635886 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004SP_0001ENSDARG00000012138ENSDART00000102807ENSDART00000111982ENSDART00000131865ENSDART00000151120ENSDARG00000023900ENSDART00000049842ENSDART00000138555CIL_0004SP_0002ENSG00000127990ENST00000265735ENST00000415788ENST00000425444ENST00000428696ENST00000437425ENST00000445866ENST00000447873ENST00000450385ENST00000462731ENST00000472326ENST00000522045ENSG00000127995ENST00000297273ENST00000417387ENST00000443644ENST00000447923ENST00000471944ENST00000489196ENST00000618861CIL_0004SP_0003ENSMUSG00000004631ENSMUST00000004750ENSMUST00000090686ENSMUST00000101677ENSMUST00000115577ENSMUST00000115579ENSMUST00000123907ENSMUST00000126151ENSMUST00000128109ENSMUST00000130428ENSMUST00000133306ENSMUST00000139029ENSMUST00000153284ENSMUSG00000015189ENSMUST00000015333ENSMUST00000141359ENSMUST00000153963ENSMUST00000181734
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004SP_0001ENSDARG00000012138ENSDART00000102807ENSDART00000111982ENSDART00000131865ENSDART00000151120ENSDARG00000023900ENSDART00000049842ENSDART00000138555CIL_0004SP_0002ENSG00000127990ENST00000265735ENST00000415788ENST00000428696ENST00000437425ENST00000445866ENST00000447873ENST00000462731ENST00000472326ENSG00000127995ENST00000297273ENST00000471944ENST00000489196ENST00000618861CIL_0004SP_0003ENSMUSG00000004631ENSMUST00000004750ENSMUST00000090686ENSMUST00000101677ENSMUST00000115577ENSMUST00000115579ENSMUST00000123907ENSMUST00000130428ENSMUST00000133306ENSMUST00000153284ENSMUSG00000015189ENSMUST00000015333
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000012138 ENSDART00000102807 N/A N/A N/A 46.636±19.21 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000111982 N/A N/A N/A 20.717±9.06 N/A N/A 39.956±5.56 3.476±0.00 0.218±0.00 N/A 5.466±0.00 N/A N/A N/A
ENSDART00000131865 N/A N/A N/A 80.848±8.53 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000151120 N/A N/A N/A 13.404±0.00 N/A N/A 37.891±17.94 2.055±0.00 0.301±0.00 N/A N/A N/A N/A N/A
ENSDARG00000023900 ENSDART00000049842 N/A N/A N/A N/A N/A N/A 0.621±0.00 1.681±0.64 N/A N/A N/A N/A N/A N/A
ENSDART00000138555 N/A N/A N/A N/A N/A N/A N/A 3.413±0.00 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000127990 ENST00000265735 7.749±0.00 4.497±0.00 2.234±0.00 2.778±0.64 4.120±1.22 10.528±9.01 1.373±0.53 2.328±1.01 3.018±0.90 6.061±0.03 1.056±0.00 23.803±12.62 15.115±0.77 16.642±0.00
ENST00000415788 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.745±0.00 N/A N/A
ENST00000425444 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000428696 N/A N/A N/A 4.056±0.50 2.713±0.00 0.422±0.00 1.777±0.00 4.000±0.00 N/A 5.787±0.00 0.948±0.00 N/A N/A N/A
ENST00000437425 3.052±0.00 7.291±0.00 N/A 5.059±0.00 5.452±0.00 15.707±0.00 2.847±0.00 6.091±0.00 2.023±0.00 9.136±0.00 0.275±0.00 10.787±10.06 7.897±0.63 4.792±0.00
ENST00000445866 N/A N/A N/A N/A 2.106±0.00 N/A 1.740±0.00 1.051±0.00 2.586±1.09 N/A 0.934±0.00 N/A N/A N/A
ENST00000447873 2.886±0.00 4.014±0.00 N/A N/A 2.589±0.00 0.653±0.00 N/A N/A N/A N/A N/A 5.465±0.00 5.450±1.66 6.400±0.00
ENST00000450385 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000462731 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.646±0.00 27.264±0.00 12.954±0.00
ENST00000472326 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.518±0.00 N/A 9.619±0.00
ENST00000522045 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000127995 ENST00000297273 2.951±0.00 3.163±0.00 N/A 4.862±0.77 2.971±0.90 5.559±0.28 5.106±0.00 1.502±0.00 2.359±1.05 1.683±0.16 1.822±0.00 3.296±1.77 1.601±1.17 5.547±0.93
ENST00000417387 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000443644 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000447923 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471944 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.491±0.00 N/A 1.295±0.00 N/A N/A
ENST00000489196 N/A N/A 0.819±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.124±0.00
ENST00000618861 N/A N/A N/A 4.222±0.00 N/A N/A 0.924±0.00 N/A N/A N/A N/A N/A 0.710±0.00 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000004631 ENSMUST00000004750 N/A N/A N/A 0.722±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000090686 4.353±0.00 2.238±0.68 N/A 6.651±0.27 2.136±0.47 0.916±0.24 1.277±0.00 0.619±0.15 0.298±0.19 N/A 0.441±0.15 3.700±0.71 6.356±2.43 0.657±0.41
ENSMUST00000101677 N/A 2.520±0.61 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.629±0.00
ENSMUST00000115577 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.361±0.05 N/A N/A N/A
ENSMUST00000115579 24.088±7.49 8.541±1.71 32.977±0.52 3.510±0.21 11.874±1.29 4.369±0.91 5.949±0.58 3.620±0.79 5.260±4.53 18.994±2.27 2.020±0.48 17.489±3.28 21.282±16.33 2.259±0.65
ENSMUST00000123907 N/A N/A N/A 1.425±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 4.986±0.70 N/A
ENSMUST00000126151 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000128109 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130428 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 34.413±0.00 N/A N/A
ENSMUST00000133306 N/A 3.494±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.700±0.61 5.529±1.01 0.554±0.00
ENSMUST00000139029 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153284 N/A N/A N/A N/A 6.683±0.00 1.396±0.00 N/A 1.956±0.00 1.828±0.00 N/A 0.727±0.27 13.661±0.00 17.451±9.90 N/A
ENSMUSG00000015189 ENSMUST00000015333 8.417±3.94 11.658±5.60 13.032±0.72 14.736±4.44 6.726±4.20 14.058±1.42 4.290±1.05 7.033±1.68 6.114±1.59 15.858±1.24 5.608±0.50 13.782±4.77 9.184±4.46 1.107±0.47
ENSMUST00000141359 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153963 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000181734 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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