C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Region Summary |
| CIL_0004SO_0001 (Click to Hide/Show) |
| Source ID | Type | Tax ID | Position | |
|---|---|---|---|---|
| ENSDARG00000020007-ENSDARG00000023900 | CGP | 7955 | 19:41943847-41994850  |
|
| Gene | Transcript | Position | Biotype | |
ENSDARG00000020007  (col1a2)collagen, type I, alpha 2 |
ENSDART00000042990 (col1a2-201)
|
41943847-41962955 | protein_coding | |
|
ENSDART00000144544 (col1a2-001)
|
41943847-41963606 | protein_coding | ||
|
ENSDARG00000023900 (casd1) CAS1 domain containing 1 |
ENSDART00000049842 (casd1-201)
|
41967605-41994611 | protein_coding | |
|
ENSDART00000138555 (casd1-001)
|
41967601-41994850 | protein_coding | ||
|
ENSDARG00000094634 (si:ch211-120e1.7) si:ch211-120e1.7 |
ENSDART00000132986 (si:ch211-120e1.7-002)
|
41904657-41945934 | retained_intron | |
|
ENSDART00000142360 (si:ch211-120e1.7-001)
|
41902178-41945945 | protein_coding | ||
| CIL_0004SO_0002 (Click to Hide/Show) |
| Source ID | Type | Tax ID | Position | |
|---|---|---|---|---|
| ENSG00000164692-ENSG00000127995 | CGP | 9606 | 7:94394561-94557019 |
|
| Gene | Transcript | Position | Biotype | |
|
ENSG00000127995 (CASD1) CAS1 domain containing 1 |
ENST00000297273 (CASD1-001)
|
94509798-94557019 | protein_coding | |
|
ENST00000417387 (CASD1-006)
|
94510071-94528250 | nonsense_mediated_decay | ||
|
ENST00000443644 (CASD1-005)
|
94510068-94535522 | nonsense_mediated_decay | ||
|
ENST00000447923 (CASD1-004)
|
94509219-94533758 | protein_coding | ||
|
ENST00000471944 (CASD1-002)
|
94551733-94556966 | retained_intron | ||
|
ENST00000489196 (CASD1-003)
|
94553852-94556966 | retained_intron | ||
|
ENST00000618861 (CASD1-201)
|
94509858-94557014 | protein_coding | ||
|
ENSG00000164692 (COL1A2) collagen, type I, alpha 2 |
ENST00000297268 (COL1A2-001)
|
94394561-94431232 | protein_coding | |
|
ENST00000461525 (COL1A2-005)
|
94417772-94421400 | retained_intron | ||
|
ENST00000464916 (COL1A2-003)
|
94427312-94430367 | retained_intron | ||
|
ENST00000467931 (COL1A2-006)
|
94419453-94421046 | retained_intron | ||
|
ENST00000469732 (COL1A2-008)
|
94423988-94425787 | retained_intron | ||
|
ENST00000473573 (COL1A2-007)
|
94414220-94422040 | retained_intron | ||
|
ENST00000478215 (COL1A2-009)
|
94425270-94426729 | retained_intron | ||
|
ENST00000481570 (COL1A2-002)
|
94422471-94430688 | retained_intron | ||
|
ENST00000488121 (COL1A2-011)
|
94426510-94427492 | retained_intron | ||
|
ENST00000488298 (COL1A2-012)
|
94413709-94416810 | retained_intron | ||
|
ENST00000492110 (COL1A2-010)
|
94426783-94427507 | retained_intron | ||
|
ENST00000497316 (COL1A2-004)
|
94417464-94423118 | retained_intron | ||
|
ENST00000620463 (COL1A2-201)
|
94394914-94430703 | protein_coding | ||
| CIL_0004SO_0003 (Click to Hide/Show) |
| Source ID | Type | Tax ID | Position | |
|---|---|---|---|---|
| ENSMUSG00000029661-ENSMUSG00000015189 | CGP | 10090 | 6:4504814-4643381 |
|
| Gene | Transcript | Position | Biotype | |
|
ENSMUSG00000015189 (Casd1) CAS1 domain containing 1 |
ENSMUST00000015333 (Casd1-001)
|
4600840-4643381 | protein_coding | |
|
ENSMUST00000141359 (Casd1-003)
|
4601203-4621132 | protein_coding | ||
|
ENSMUST00000153963 (Casd1-002)
|
4601146-4608748 | processed_transcript | ||
|
ENSMUST00000181734 (Casd1-004)
|
4601145-4635886 | protein_coding | ||
|
ENSMUSG00000029661 (Col1a2) collagen, type I, alpha 2 |
ENSMUST00000031668 (Col1a2-001)
|
4505493-4541543 | protein_coding | |
|
ENSMUST00000124686 (Col1a2-008)
|
4535781-4536623 | retained_intron | ||
|
ENSMUST00000132029 (Col1a2-003)
|
4505702-4515019 | retained_intron | ||
|
ENSMUST00000138511 (Col1a2-002)
|
4505702-4514529 | retained_intron | ||
|
ENSMUST00000139201 (Col1a2-007)
|
4534904-4535885 | retained_intron | ||
|
ENSMUST00000141483 (Col1a2-005)
|
4504814-4516419 | protein_coding | ||
|
ENSMUST00000148864 (Col1a2-004)
|
4520624-4529452 | retained_intron | ||
|
ENSMUST00000155687 (Col1a2-006)
|
4530156-4535057 | retained_intron | ||
|
ENSMUSG00000097513 (Gm26696) predicted gene, 26696 |
ENSMUST00000181941 (Gm26696-001)
|
4593804-4596651 | lincRNA | |
Expression Patterns
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