C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_0004SO_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000020007-ENSDARG00000023900 CGP 7955 19:41943847-41994850
GeneTranscriptPositionBiotype
ENSDARG00000020007 (col1a2)
collagen, type I, alpha 2
ENSDART00000042990 (col1a2-201) 41943847-41962955 protein_coding
ENSDART00000144544 (col1a2-001) 41943847-41963606 protein_coding
ENSDARG00000023900 (casd1)
CAS1 domain containing 1
ENSDART00000049842 (casd1-201) 41967605-41994611 protein_coding
ENSDART00000138555 (casd1-001) 41967601-41994850 protein_coding
ENSDARG00000094634 (si:ch211-120e1.7)
si:ch211-120e1.7
ENSDART00000132986 (si:ch211-120e1.7-002) 41904657-41945934 retained_intron
ENSDART00000142360 (si:ch211-120e1.7-001) 41902178-41945945 protein_coding
CIL_0004SO_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000164692-ENSG00000127995 CGP 9606 7:94394561-94557019
GeneTranscriptPositionBiotype
ENSG00000127995 (CASD1)
CAS1 domain containing 1
ENST00000297273 (CASD1-001) 94509798-94557019 protein_coding
ENST00000417387 (CASD1-006) 94510071-94528250 nonsense_mediated_decay
ENST00000443644 (CASD1-005) 94510068-94535522 nonsense_mediated_decay
ENST00000447923 (CASD1-004) 94509219-94533758 protein_coding
ENST00000471944 (CASD1-002) 94551733-94556966 retained_intron
ENST00000489196 (CASD1-003) 94553852-94556966 retained_intron
ENST00000618861 (CASD1-201) 94509858-94557014 protein_coding
ENSG00000164692 (COL1A2)
collagen, type I, alpha 2
ENST00000297268 (COL1A2-001) 94394561-94431232 protein_coding
ENST00000461525 (COL1A2-005) 94417772-94421400 retained_intron
ENST00000464916 (COL1A2-003) 94427312-94430367 retained_intron
ENST00000467931 (COL1A2-006) 94419453-94421046 retained_intron
ENST00000469732 (COL1A2-008) 94423988-94425787 retained_intron
ENST00000473573 (COL1A2-007) 94414220-94422040 retained_intron
ENST00000478215 (COL1A2-009) 94425270-94426729 retained_intron
ENST00000481570 (COL1A2-002) 94422471-94430688 retained_intron
ENST00000488121 (COL1A2-011) 94426510-94427492 retained_intron
ENST00000488298 (COL1A2-012) 94413709-94416810 retained_intron
ENST00000492110 (COL1A2-010) 94426783-94427507 retained_intron
ENST00000497316 (COL1A2-004) 94417464-94423118 retained_intron
ENST00000620463 (COL1A2-201) 94394914-94430703 protein_coding
CIL_0004SO_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029661-ENSMUSG00000015189 CGP 10090 6:4504814-4643381
GeneTranscriptPositionBiotype
ENSMUSG00000015189 (Casd1)
CAS1 domain containing 1
ENSMUST00000015333 (Casd1-001) 4600840-4643381 protein_coding
ENSMUST00000141359 (Casd1-003) 4601203-4621132 protein_coding
ENSMUST00000153963 (Casd1-002) 4601146-4608748 processed_transcript
ENSMUST00000181734 (Casd1-004) 4601145-4635886 protein_coding
ENSMUSG00000029661 (Col1a2)
collagen, type I, alpha 2
ENSMUST00000031668 (Col1a2-001) 4505493-4541543 protein_coding
ENSMUST00000124686 (Col1a2-008) 4535781-4536623 retained_intron
ENSMUST00000132029 (Col1a2-003) 4505702-4515019 retained_intron
ENSMUST00000138511 (Col1a2-002) 4505702-4514529 retained_intron
ENSMUST00000139201 (Col1a2-007) 4534904-4535885 retained_intron
ENSMUST00000141483 (Col1a2-005) 4504814-4516419 protein_coding
ENSMUST00000148864 (Col1a2-004) 4520624-4529452 retained_intron
ENSMUST00000155687 (Col1a2-006) 4530156-4535057 retained_intron
ENSMUSG00000097513 (Gm26696)
predicted gene, 26696
ENSMUST00000181941 (Gm26696-001) 4593804-4596651 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004SO_0001ENSDARG00000020007ENSDART00000042990ENSDART00000144544ENSDARG00000023900ENSDART00000049842ENSDART00000138555ENSDARG00000094634ENSDART00000132986ENSDART00000142360CIL_0004SO_0002ENSG00000127995ENST00000297273ENST00000417387ENST00000443644ENST00000447923ENST00000471944ENST00000489196ENST00000618861ENSG00000164692ENST00000297268ENST00000461525ENST00000464916ENST00000467931ENST00000469732ENST00000473573ENST00000478215ENST00000481570ENST00000488121ENST00000488298ENST00000492110ENST00000497316ENST00000620463CIL_0004SO_0003ENSMUSG00000015189ENSMUST00000015333ENSMUST00000141359ENSMUST00000153963ENSMUST00000181734ENSMUSG00000029661ENSMUST00000031668ENSMUST00000124686ENSMUST00000132029ENSMUST00000138511ENSMUST00000139201ENSMUST00000141483ENSMUST00000148864ENSMUST00000155687ENSMUSG00000097513ENSMUST00000181941
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004SO_0001ENSDARG00000020007ENSDART00000042990ENSDART00000144544ENSDARG00000023900ENSDART00000049842ENSDART00000138555ENSDARG00000094634ENSDART00000132986ENSDART00000142360CIL_0004SO_0002ENSG00000127995ENST00000297273ENST00000471944ENST00000489196ENST00000618861ENSG00000164692ENST00000297268ENST00000473573ENST00000497316ENST00000620463CIL_0004SO_0003ENSMUSG00000015189ENSMUST00000015333ENSMUSG00000029661ENSMUST00000031668ENSMUST00000138511ENSMUST00000141483ENSMUSG00000097513ENSMUST00000181941
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000020007 ENSDART00000042990 N/A N/A N/A 1.236±0.33 N/A N/A 9.355±7.41 18.498±5.60 N/A N/A 49.654±0.00 N/A N/A N/A
ENSDART00000144544 N/A N/A N/A 0.643±0.09 N/A N/A 3.640±2.50 15.246±6.62 N/A N/A 12.670±0.00 N/A N/A N/A
ENSDARG00000023900 ENSDART00000049842 N/A N/A N/A N/A N/A N/A 0.621±0.00 1.681±0.64 N/A N/A N/A N/A N/A N/A
ENSDART00000138555 N/A N/A N/A N/A N/A N/A N/A 3.413±0.00 N/A N/A N/A N/A N/A N/A
ENSDARG00000094634 ENSDART00000132986 N/A N/A N/A 0.489±0.13 N/A N/A 0.618±0.07 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000142360 N/A N/A N/A 0.512±0.00 N/A N/A 0.232±0.00 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000127995 ENST00000297273 2.951±0.00 3.163±0.00 N/A 4.862±0.77 2.971±0.90 5.559±0.28 5.106±0.00 1.502±0.00 2.359±1.05 1.683±0.16 1.822±0.00 3.296±1.77 1.601±1.17 5.547±0.93
ENST00000417387 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000443644 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000447923 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471944 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.491±0.00 N/A 1.295±0.00 N/A N/A
ENST00000489196 N/A N/A 0.819±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.124±0.00
ENST00000618861 N/A N/A N/A 4.222±0.00 N/A N/A 0.924±0.00 N/A N/A N/A N/A N/A 0.710±0.00 N/A
ENSG00000164692 ENST00000297268 12.899±0.00 18.811±0.00 2.095±0.00 0.492±0.06 58.405±5.26 13.454±1.61 5.100±0.44 12.889±0.00 1.887±0.00 13.803±3.56 3.415±0.00 132.611±101.36 114.140±32.23 36.541±14.37
ENST00000461525 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464916 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467931 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469732 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473573 N/A N/A 9.120±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478215 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481570 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488121 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488298 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492110 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497316 N/A N/A N/A 1.496±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000620463 80.291±0.00 96.884±0.00 3.734±0.00 1.538±0.87 152.479±64.49 46.730±17.62 21.229±14.13 24.541±19.38 37.950±26.02 61.967±40.02 9.935±6.24 258.471±194.71 232.823±65.08 90.358±60.99
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000015189 ENSMUST00000015333 8.417±3.94 11.658±5.60 13.032±0.72 14.736±4.44 6.726±4.20 14.058±1.42 4.290±1.05 7.033±1.68 6.114±1.59 15.858±1.24 5.608±0.50 13.782±4.77 9.184±4.46 1.107±0.47
ENSMUST00000141359 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153963 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000181734 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000029661 ENSMUST00000031668 139.585±122.17 22.421±1.80 512.787±17.02 22.251±15.79 205.415±81.10 32.780±24.31 14.043±9.86 25.245±3.52 6.616±6.47 52.637±37.59 28.950±4.12 137.778±71.68 141.615±0.12 5.597±4.12
ENSMUST00000124686 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132029 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138511 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 341.659±0.00 N/A N/A
ENSMUST00000139201 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141483 N/A 27.895±4.23 N/A N/A N/A 48.306±0.00 25.359±0.00 19.781±2.64 2.709±0.70 N/A N/A 289.930±48.24 N/A N/A
ENSMUST00000148864 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155687 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000097513 ENSMUST00000181941 0.015±0.00 0.093±0.05 0.013±0.00 0.015±0.00 0.027±0.00 N/A N/A 0.029±0.01 0.019±0.02 0.047±0.02 0.014±0.00 0.117±0.09 0.019±0.01 0.279±0.17

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