C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: acyl-CoA dehydrogenase, short/branched chain
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000368869 ACADSB-004 ENSG00000196177 9606 + 10:123008979-123054119 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonLiverLungMuscleOvaryPlacentaTestisENST00000368869
Transcript ID Colon Liver Lung Muscle Ovary Placenta Testis
ENST00000368869 1.453±0.00 2.008±0.00 1.112±0.00 2.868±0.00 3.584±0.00 1.825±0.00 3.779±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008DB CIL_0008DB_0001 VISTA 10:122767938-123370218
CIL_0009A3 CIL_0009A3_0001 VISTA 10:122792297-123393555
CIL_0007QE CIL_0007QE_0001 VISTA 10:122843411-123445122
CIL_00011Q CIL_00011Q_0001 CGP 10:122990806-123058311
CIL_00011R CIL_00011R_0001 CGP 10:123008979-123137741

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003995 EXP:IEA acyl-CoA dehydrogenase activity
GO:0005739 IDA mitochondrion
GO:0005759 TAS mitochondrial matrix
GO:0006631 IEA fatty acid metabolic process
GO:0008152 IEA metabolic process
GO:0009083 TAS branched-chain amino acid catabolic process
GO:0016627 IEA oxidoreductase activity, acting on the CH-CH group of donors
GO:0034641 TAS cellular nitrogen compound metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0050660 IEA flavin adenine dinucleotide binding
GO:0055114 IEA oxidation-reduction process
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000015829 Acadsb-001 protein_coding Mus_musculus 0 976
ENSMUST00000117518 Acadsb-003 protein_coding Mus_musculus 0 881
ENSMUST00000156261 Acadsb-002 retained_intron Mus_musculus 0 798
ENSMUST00000136612 Acadsb-007 retained_intron Mus_musculus 0 244

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