C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: acyl-CoA dehydrogenase, short/branched chain
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000358776 ACADSB-001 ENSG00000196177 9606 + 10:123009016-123058311 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000358776
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000358776 1.835±0.00 1.446±0.00 8.815±0.00 3.127±1.57 2.836±1.34 1.778±0.27 6.652±5.43 32.649±27.44 21.512±19.67 0.463±0.04 2.045±0.07 1.246±0.72 0.854±0.06 1.490±0.76

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008DB CIL_0008DB_0001 VISTA 10:122767938-123370218
CIL_0009A3 CIL_0009A3_0001 VISTA 10:122792297-123393555
CIL_0007QE CIL_0007QE_0001 VISTA 10:122843411-123445122
CIL_00011Q CIL_00011Q_0001 CGP 10:122990806-123058311
CIL_00011R CIL_00011R_0001 CGP 10:123008979-123137741

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003995 EXP:IEA acyl-CoA dehydrogenase activity
GO:0005739 IDA mitochondrion
GO:0005759 TAS mitochondrial matrix
GO:0006631 IEA fatty acid metabolic process
GO:0008152 IEA metabolic process
GO:0009083 TAS branched-chain amino acid catabolic process
GO:0016627 IEA oxidoreductase activity, acting on the CH-CH group of donors
GO:0034641 TAS cellular nitrogen compound metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0050660 IEA flavin adenine dinucleotide binding
GO:0055114 IEA oxidation-reduction process
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000015829 Acadsb-001 protein_coding Mus_musculus 0 1153
ENSMUST00000117518 Acadsb-003 protein_coding Mus_musculus 0 1059
ENSMUST00000156261 Acadsb-002 retained_intron Mus_musculus 0 798
ENSMUST00000136612 Acadsb-007 retained_intron Mus_musculus 0 244

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