C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000016569 Pds5b-001 ENSMUSG00000034021 10090 + 5:150673739-150810690 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000016569
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000016569 1.091±0.10 2.940±0.86 7.974±3.18 0.949±0.05 0.227±0.00 0.903±0.58 0.822±0.35 2.419±1.40 1.183±0.45 3.221±0.62 2.407±1.41 2.258±1.40 1.199±0.46

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006FL CIL_0006FL_0002 CGP 5:150608007-150810690
CIL_0000UY CIL_0000UY_0002 CGP 5:150673739-150993809

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000785 IEA chromatin
GO:0003674 ND molecular_function
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0007064 ISS mitotic sister chromatid cohesion
GO:0008285 ISS negative regulation of cell proliferation
GO:0042127 IEA regulation of cell proliferation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000154435 pds5b-001 protein_coding Danio_rerio 0 2041
ENSDART00000087246 pds5b-201 protein_coding Danio_rerio 0 2039
ENST00000315596 PDS5B-006 protein_coding Homo_sapiens 0 6641
ENST00000447833 PDS5B-012 protein_coding Homo_sapiens 0 1068
ENST00000450460 PDS5B-007 nonsense_mediated_decay Homo_sapiens 0 5385
ENST00000474274 PDS5B-010 retained_intron Homo_sapiens 0 514
ENST00000481616 PDS5B-004 retained_intron Homo_sapiens 0 440
ENST00000482955 PDS5B-011 retained_intron Homo_sapiens 0 617
ENST00000493653 PDS5B-008 retained_intron Homo_sapiens 0 442
ENST00000498550 PDS5B-009 retained_intron Homo_sapiens 0 2006

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