C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000034021 Pds5b 10090 + 5:150673739-150810690 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000016569 Pds5b-001 150673739-150810690 protein_coding
  ENSMUST00000038900 Pds5b-201 150673827-150810667 protein_coding
  ENSMUST00000110486 Pds5b-002 150756303-150797424 protein_coding
  ENSMUST00000132947 Pds5b-003 150805229-150810480 retained_intron
  ENSMUST00000133738 Pds5b-004 150747822-150748613 processed_transcript
  ENSMUST00000154083 Pds5b-005 150759364-150769865 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000016569ENSMUST00000038900ENSMUST00000110486ENSMUST00000132947ENSMUST00000154083
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000016569 1.091±0.10 N/A 2.940±0.86 7.974±3.18 0.949±0.05 0.227±0.00 0.903±0.58 0.822±0.35 2.419±1.40 1.183±0.45 3.221±0.62 2.407±1.41 2.258±1.40 1.199±0.46
ENSMUST00000038900 1.539±0.63 0.798±0.25 N/A 2.091±0.23 1.487±0.67 0.973±0.42 1.148±0.33 1.016±0.35 0.625±0.28 1.019±0.32 0.596±0.08 1.606±0.72 0.991±0.00 0.795±0.14
ENSMUST00000110486 0.760±0.00 0.962±0.00 N/A N/A 0.908±0.00 N/A N/A N/A N/A N/A N/A 1.466±0.00 0.861±0.00 1.294±0.34
ENSMUST00000132947 3.072±1.97 2.505±0.53 3.398±0.00 6.270±0.01 2.717±0.81 1.166±0.33 1.177±0.15 1.678±0.38 1.065±0.56 4.923±1.65 N/A 2.112±0.81 N/A N/A
ENSMUST00000154083 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.176±1.45 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006FL CIL_0006FL_0002 CGP 5:150608007-150810690
CIL_0000UY CIL_0000UY_0002 CGP 5:150673739-150993809

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000785 IEA chromatin
GO:0003674 ND molecular_function
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0007064 ISS mitotic sister chromatid cohesion
GO:0008285 ISS negative regulation of cell proliferation
GO:0042127 IEA regulation of cell proliferation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061312 pds5b PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae) protein_coding Danio_rerio
ENSG00000083642 PDS5B PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae) protein_coding Homo_sapiens

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