C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000450460 PDS5B-007 ENSG00000083642 9606 + 13:32586548-32775908 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000450460
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000450460 3.073±0.00 2.549±0.00 0.742±0.00 2.906±0.00 1.495±0.00 2.464±0.00 0.952±0.00 1.426±0.41 1.043±0.80 2.287±0.00 1.835±0.29 1.017±0.36 2.015±0.25

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000UY CIL_0000UY_0001 CGP 13:32586427-33066145

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000278 TAS mitotic cell cycle
GO:0000775 TAS chromosome, centromeric region
GO:0000785 IDA chromatin
GO:0003677 IEA DNA binding
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005524 TAS ATP binding
GO:0005634 ISS nucleus
GO:0005654 TAS nucleoplasm
GO:0005694 TAS chromosome
GO:0005829 TAS cytosol
GO:0007064 IMP mitotic sister chromatid cohesion
GO:0008283 TAS cell proliferation
GO:0008285 IDA negative regulation of cell proliferation
GO:0042127 IDA regulation of cell proliferation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000038900 Pds5b-201 protein_coding Mus_musculus 0 5411
ENSMUST00000016569 Pds5b-001 protein_coding Mus_musculus 0 5385
ENSMUST00000110486 Pds5b-002 protein_coding Mus_musculus 0 2721
ENSDART00000154435 pds5b-001 protein_coding Danio_rerio 0 1842
ENSDART00000087246 pds5b-201 protein_coding Danio_rerio 0 1840
ENSMUST00000132947 Pds5b-003 retained_intron Mus_musculus 0 617
ENSMUST00000154083 Pds5b-005 processed_transcript Mus_musculus 0 374

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