C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 17031
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000016698 Gm17031-001 ENSMUSG00000091442 10090 + 12:106508242-106509910 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainPlacentaENSMUST00000016698
Transcript ID Brain Placenta
ENSMUST00000016698 0.004±0.00 0.009±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007JE CIL_0007JE_0002 UCNEbase 12:105838681-106687937
CIL_0008VD CIL_0008VD_0002 VISTA 12:106077315-106678522
CIL_0008VE CIL_0008VE_0002 VISTA 12:106179344-106780241

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000216190 EIF3D-001 protein_coding Homo_sapiens 0 835
ENST00000402116 EIF3D-007 protein_coding Homo_sapiens 0 322
ENST00000405442 EIF3D-002 protein_coding Homo_sapiens 0 817
ENST00000426531 EIF3D-009 retained_intron Homo_sapiens 0 571
ENST00000432675 EIF3D-003 protein_coding Homo_sapiens 0 394
ENST00000455547 EIF3D-005 protein_coding Homo_sapiens 0 717
ENST00000457241 EIF3D-006 protein_coding Homo_sapiens 0 429
ENST00000458572 EIF3D-010 nonsense_mediated_decay Homo_sapiens 0 246
ENST00000462641 EIF3D-012 retained_intron Homo_sapiens 0 424
ENST00000478547 EIF3D-011 processed_transcript Homo_sapiens 3e-20 102
ENST00000496875 EIF3D-004 retained_intron Homo_sapiens 3.00004e-41 172

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