C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: serine/arginine-rich splicing factor 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000017065 Srsf6-002 ENSMUSG00000016921 10090 + 2:162931562-162935026 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000017065
Transcript ID Adipose Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000017065 25.385±10.14 64.212±18.95 57.687±10.48 22.156±2.66 15.051±3.30 13.540±4.06 47.866±11.48 14.374±4.16 13.922±1.88 126.831±77.85 95.230±68.49 28.946±6.28

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004E4 CIL_0004E4_0002 CGP 2:161521990-162937121
CIL_00044L CIL_00044L_0002 CGP 2:162931528-162974522

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000244020 SRSF6-001 protein_coding Homo_sapiens 0 1129
ENST00000373795 SRSF4-001 protein_coding Homo_sapiens 0 213
ENST00000414124 AC005822.1-001 processed_pseudogene Homo_sapiens 0 852
ENST00000447169 RP5-1158E12.2-001 processed_pseudogene Homo_sapiens 0 588
ENST00000466448 SRSF4-002 processed_transcript Homo_sapiens 0 213
ENST00000483871 SRSF6-002 nonsense_mediated_decay Homo_sapiens 0 2047
ENST00000497015 SRSF4-005 processed_transcript Homo_sapiens 0 213
ENST00000605204 SRSF4-007 nonsense_mediated_decay Homo_sapiens 0 213
ENST00000622143 SRSF4-008 processed_transcript Homo_sapiens 0 213

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