C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004E4_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000196090-ENSG00000124193 CGP 9606 20:42072752-43464247
GeneTranscriptPositionBiotype
ENSG00000124193 (SRSF6)
serine/arginine-rich splicing factor 6 		ENST00000244020 (SRSF6-001) 43457928-43464247 protein_coding
ENST00000483871 (SRSF6-002) 43457928-43461334 nonsense_mediated_decay
ENSG00000196090 (PTPRT)
protein tyrosine phosphatase, receptor type, T 		ENST00000356100 (PTPRT-004) 42072752-43189733 protein_coding
ENST00000373184 (PTPRT-006) 42072752-43189733 protein_coding
ENST00000373187 (PTPRT-002) 42072752-43189733 protein_coding
ENST00000373190 (PTPRT-001) 42072752-43189842 protein_coding
ENST00000373193 (PTPRT-009) 42072774-43189917 protein_coding
ENST00000373198 (PTPRT-005) 42072752-43189969 protein_coding
ENST00000373201 (PTPRT-007) 42072752-43189970 protein_coding
ENST00000485499 (PTPRT-008) 42885842-42966419 processed_transcript
ENST00000612229 (PTPRT-201) 42072774-42472569 protein_coding
ENST00000617474 (PTPRT-010) 42080879-43189917 nonsense_mediated_decay
ENST00000618610 (PTPRT-202) 42080879-42472562 protein_coding
ENST00000620410 (PTPRT-203) 42677866-42791467 protein_coding
ENSG00000223190 (RN7SKP100)
RNA, 7SK small nuclear pseudogene 100 		ENST00000411258 (RN7SKP100-201) 43063326-43063609 misc_RNA
ENSG00000226038 (PPIAP21)
peptidylprolyl isomerase A (cyclophilin A) pseudogene 21 		ENST00000464473 (PPIAP21-001) 43230760-43231260 processed_pseudogene
ENSG00000227599 (RP4-753D4.2)
 ENST00000412519 (RP4-753D4.2-001) 42968743-42971492 antisense
ENSG00000229042 (RP1-232N11.2)
 ENST00000457704 (RP1-232N11.2-001) 42685483-42688562 antisense
ENST00000608258 (RP1-232N11.2-002) 42685404-42686217 antisense
ENSG00000229892 (RP4-730D4.1)
 ENST00000446195 (RP4-730D4.1-001) 42606694-42607559 processed_pseudogene
ENSG00000233508 (RP1-269M15.3)
 ENST00000430025 (RP1-269M15.3-001) 43190222-43201371 lincRNA
ENST00000611791 (RP1-269M15.3-002) 43190101-43202599 lincRNA
ENSG00000233711 (EIF4EBP2P1)
eukaryotic translation initiation factor 4E binding protein 2 pseudogene 1 		ENST00000450009 (EIF4EBP2P1-001) 43423196-43423538 processed_pseudogene
ENSG00000237555 (RP5-862K6.4)
 ENST00000443304 (RP5-862K6.4-001) 43388642-43389041 processed_pseudogene
ENSG00000240639 (RN7SL666P)
RNA, 7SL, cytoplasmic 666, pseudogene 		ENST00000460953 (RN7SL666P-201) 43222206-43222509 misc_RNA

Homo sapiens Ensembl (GRCh38)

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CIL_0004E4_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000053141-ENSMUSG00000016921 CGP 10090 2:161521990-162937121
GeneTranscriptPositionBiotype
ENSMUSG00000016921 (Srsf6)
serine/arginine-rich splicing factor 6 		ENSMUST00000017065 (Srsf6-002) 162931562-162935026 processed_transcript
ENSMUST00000126163 (Srsf6-003) 162931661-162933509 processed_transcript
ENSMUST00000130411 (Srsf6-001) 162931528-162937121 protein_coding
ENSMUSG00000053141 (Ptprt)
protein tyrosine phosphatase, receptor type, T 		ENSMUST00000109441 (Ptprt-004) 161527509-162661147 protein_coding
ENSMUST00000109442 (Ptprt-002) 161526357-162661094 protein_coding
ENSMUST00000109443 (Ptprt-003) 161521990-162661147 protein_coding
ENSMUST00000109445 (Ptprt-001) 161521990-162661147 protein_coding
ENSMUST00000129015 (Ptprt-005) 162012015-162135451 processed_transcript
ENSMUST00000153770 (Ptprt-006) 161698009-161800155 processed_transcript
ENSMUSG00000054457 (9430021M05Rik)
RIKEN cDNA 9430021M05 gene 		ENSMUST00000145985 (9430021M05Rik-001) 162661163-162667109 processed_transcript
ENSMUSG00000082296 (Gm11450)
predicted gene 11450 		ENSMUST00000121144 (Gm11450-001) 162805590-162805922 processed_pseudogene
ENSMUSG00000082514 (Gm11452)
predicted gene 11452 		ENSMUST00000122376 (Gm11452-001) 162907924-162908613 processed_pseudogene
ENSMUSG00000083567 (Gm11451)
predicted gene 11451 		ENSMUST00000118946 (Gm11451-001) 162898894-162899523 processed_pseudogene
ENSMUSG00000084919 (Ptprtos)
protein tyrosine phosphatase, receptor type T, opposite strand 		ENSMUST00000151688 (Ptprtos-001) 162390813-162393945 antisense
ENSMUSG00000087536 (Gm14246)
predicted gene 14246 		ENSMUST00000155173 (Gm14246-001) 162679455-162680529 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004E4_0001ENSG00000124193ENST00000244020ENST00000483871ENSG00000196090ENST00000356100ENST00000373184ENST00000373187ENST00000373190ENST00000373193ENST00000373198ENST00000373201ENST00000485499ENST00000612229ENST00000617474ENST00000618610ENST00000620410ENSG00000223190ENST00000411258ENSG00000226038ENST00000464473ENSG00000227599ENST00000412519ENSG00000229042ENST00000457704ENST00000608258ENSG00000229892ENST00000446195ENSG00000233508ENST00000430025ENST00000611791ENSG00000233711ENST00000450009ENSG00000237555ENST00000443304ENSG00000240639ENST00000460953CIL_0004E4_0002ENSMUSG00000016921ENSMUST00000017065ENSMUST00000126163ENSMUST00000130411ENSMUSG00000053141ENSMUST00000109441ENSMUST00000109442ENSMUST00000109443ENSMUST00000109445ENSMUST00000129015ENSMUST00000153770ENSMUSG00000054457ENSMUST00000145985ENSMUSG00000082296ENSMUST00000121144ENSMUSG00000082514ENSMUST00000122376ENSMUSG00000083567ENSMUST00000118946ENSMUSG00000084919ENSMUST00000151688ENSMUSG00000087536ENSMUST00000155173
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004E4_0001ENSG00000124193ENST00000244020ENST00000483871ENSG00000196090ENST00000356100ENST00000373184ENST00000373187ENST00000373190ENST00000373201ENST00000612229ENST00000617474ENST00000618610ENST00000620410ENSG00000223190ENST00000411258ENSG00000226038ENST00000464473ENSG00000227599ENST00000412519ENSG00000229042ENST00000457704ENST00000608258ENSG00000229892ENST00000446195ENSG00000233508ENST00000430025ENST00000611791ENSG00000233711ENST00000450009ENSG00000237555ENST00000443304ENSG00000240639ENST00000460953CIL_0004E4_0002ENSMUSG00000016921ENSMUST00000017065ENSMUST00000130411ENSMUSG00000053141ENSMUST00000109441ENSMUST00000109442ENSMUST00000109443ENSMUST00000109445ENSMUST00000129015ENSMUSG00000054457ENSMUST00000145985ENSMUSG00000082296ENSMUST00000121144ENSMUSG00000082514ENSMUST00000122376ENSMUSG00000083567ENSMUST00000118946ENSMUSG00000084919ENSMUST00000151688ENSMUSG00000087536ENSMUST00000155173
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000124193 ENST00000244020 N/A N/A 4.868±0.00 4.639±0.00 9.254±0.00 5.514±0.00 1.568±0.00 3.572±0.00 N/A 5.785±0.00 0.892±0.00 6.513±2.49 3.494±2.52 N/A
ENST00000483871 4.229±0.00 N/A 19.393±0.00 9.697±0.00 28.921±0.00 18.687±11.15 6.220±0.13 19.183±1.43 14.049±2.78 14.525±5.93 5.995±3.13 36.233±10.68 14.940±1.88 34.915±15.92
ENSG00000196090 ENST00000356100 N/A N/A N/A 2.416±0.00 N/A N/A N/A N/A N/A N/A N/A 0.005±0.00 N/A 0.524±0.00
ENST00000373184 N/A 0.037±0.00 N/A 0.965±0.00 N/A 0.086±0.00 N/A N/A N/A 0.570±0.00 N/A 0.376±0.37 0.266±0.09 N/A
ENST00000373187 N/A N/A N/A N/A N/A N/A 0.067±0.00 N/A N/A N/A N/A 0.003±0.00 0.143±0.00 N/A
ENST00000373190 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.178±0.00 N/A
ENST00000373193 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000373198 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000373201 N/A 0.038±0.00 N/A N/A 0.230±0.00 N/A N/A N/A N/A N/A N/A 0.005±0.00 N/A N/A
ENST00000485499 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000612229 0.005±0.00 0.070±0.00 N/A 6.667±3.85 0.203±0.06 0.039±0.00 0.011±0.00 0.103±0.04 0.097±0.01 0.441±0.12 0.009±0.01 0.140±0.19 0.217±0.00 0.399±0.00
ENST00000617474 N/A N/A 0.077±0.00 N/A N/A N/A 0.040±0.00 N/A N/A N/A N/A N/A 0.398±0.00 N/A
ENST00000618610 0.038±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.264±0.00 N/A
ENST00000620410 N/A N/A N/A N/A 0.720±0.00 0.325±0.00 N/A 0.520±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000223190 ENST00000411258 N/A N/A N/A N/A N/A 6.379±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000226038 ENST00000464473 N/A 0.063±0.00 N/A 0.335±0.00 0.064±0.00 N/A N/A 0.032±0.00 N/A N/A 0.027±0.00 0.061±0.00 N/A 0.062±0.00
ENSG00000227599 ENST00000412519 N/A N/A N/A 0.023±0.00 N/A N/A 0.042±0.00 0.029±0.00 N/A 0.057±0.00 N/A N/A N/A 0.290±0.00
ENSG00000229042 ENST00000457704 N/A N/A N/A 0.007±0.00 0.037±0.00 N/A N/A N/A N/A N/A N/A N/A 0.023±0.00 0.071±0.00
ENST00000608258 N/A N/A N/A 0.360±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.067±0.00 N/A
ENSG00000229892 ENST00000446195 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.152±0.00 N/A N/A N/A N/A
ENSG00000233508 ENST00000430025 N/A 0.072±0.00 N/A N/A 0.043±0.00 N/A N/A N/A 0.056±0.00 N/A N/A N/A 0.061±0.01 0.162±0.00
ENST00000611791 N/A 0.009±0.00 N/A N/A 0.053±0.00 N/A N/A 0.124±0.00 N/A N/A N/A 0.014±0.00 0.023±0.00 0.016±0.00
ENSG00000233711 ENST00000450009 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.412±0.00
ENSG00000237555 ENST00000443304 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.170±0.04
ENSG00000240639 ENST00000460953 N/A N/A N/A N/A N/A N/A N/A N/A 0.063±0.00 N/A N/A 0.255±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000016921 ENSMUST00000017065 25.385±10.14 N/A 64.212±18.95 57.687±10.48 22.156±2.66 N/A 15.051±3.30 13.540±4.06 47.866±11.48 14.374±4.16 13.922±1.88 126.831±77.85 95.230±68.49 28.946±6.28
ENSMUST00000126163 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130411 21.414±9.32 403.551±147.17 24.102±10.39 48.992±34.19 41.499±23.85 39.146±3.54 7.550±2.52 20.868±8.58 31.363±16.07 24.333±2.93 3.077±0.27 132.928±96.82 16.972±8.94 9.279±3.81
ENSMUSG00000053141 ENSMUST00000109441 0.003±0.00 0.039±0.00 N/A N/A 0.042±0.03 0.196±0.09 0.014±0.01 0.018±0.01 0.036±0.02 0.052±0.02 N/A 0.335±0.11 N/A 0.147±0.03
ENSMUST00000109442 N/A 0.035±0.01 N/A N/A 0.035±0.00 N/A N/A N/A N/A N/A N/A 0.551±0.05 0.002±0.00 0.033±0.00
ENSMUST00000109443 0.005±0.00 0.012±0.00 N/A 2.912±1.34 0.018±0.01 0.071±0.02 0.004±0.00 0.005±0.00 0.014±0.01 0.028±0.01 0.004±0.00 0.160±0.06 0.004±0.00 N/A
ENSMUST00000109445 0.005±0.00 0.012±0.00 0.039±0.02 1.349±1.11 0.021±0.01 0.143±0.07 0.004±0.00 0.005±0.00 0.024±0.01 0.038±0.01 0.024±0.01 0.205±0.10 0.004±0.00 0.199±0.08
ENSMUST00000129015 0.201±0.00 N/A N/A N/A 0.502±0.38 3.634±1.32 N/A N/A 0.392±0.05 1.509±0.12 0.391±0.00 3.692±0.77 0.144±0.00 N/A
ENSMUST00000153770 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000054457 ENSMUST00000145985 N/A 0.054±0.02 N/A 0.856±0.33 N/A 0.140±0.08 0.041±0.02 0.049±0.00 N/A N/A 0.052±0.00 0.309±0.19 N/A N/A
ENSMUSG00000082296 ENSMUST00000121144 N/A N/A N/A N/A 0.251±0.00 0.341±0.00 N/A N/A N/A N/A N/A 0.274±0.00 0.385±0.26 N/A
ENSMUSG00000082514 ENSMUST00000122376 N/A N/A 0.029±0.00 N/A N/A N/A N/A 0.057±0.00 N/A N/A N/A N/A N/A 0.056±0.00
ENSMUSG00000083567 ENSMUST00000118946 0.498±0.23 0.376±0.14 0.198±0.00 0.231±0.18 0.337±0.05 0.240±0.11 1.289±0.42 0.430±0.21 0.342±0.21 0.281±0.17 0.106±0.06 0.451±0.15 N/A 0.910±0.39
ENSMUSG00000084919 ENSMUST00000151688 N/A N/A N/A 0.074±0.00 N/A N/A N/A N/A N/A N/A N/A 0.333±0.00 0.039±0.03 N/A
ENSMUSG00000087536 ENSMUST00000155173 N/A N/A N/A 0.529±0.68 N/A N/A N/A N/A N/A N/A N/A 0.054±0.00 N/A N/A

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