C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00044L_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000124193-ENSG00000185513 CGP 9606 20:43457928-43550950
GeneTranscriptPositionBiotype
ENSG00000124193 (SRSF6)
serine/arginine-rich splicing factor 6 		ENST00000244020 (SRSF6-001) 43457928-43464247 protein_coding
ENST00000483871 (SRSF6-002) 43457928-43461334 nonsense_mediated_decay
ENSG00000185513 (L3MBTL1)
l(3)mbt-like 1 (Drosophila) 		ENST00000373133 (L3MBTL1-010) 43530969-43541189 retained_intron
ENST00000373134 (L3MBTL1-003) 43514526-43541189 protein_coding
ENST00000373135 (L3MBTL1-005) 43514413-43541895 protein_coding
ENST00000418998 (L3MBTL1-201) 43507680-43541894 protein_coding
ENST00000422861 (L3MBTL1-011) 43528707-43550950 protein_coding
ENST00000427442 (L3MBTL1-007) 43507680-43541603 protein_coding
ENST00000430781 (L3MBTL1-019) 43514469-43528891 retained_intron
ENST00000434666 (L3MBTL1-014) 43507680-43515150 protein_coding
ENST00000439769 (L3MBTL1-015) 43507710-43514754 protein_coding
ENST00000445228 (L3MBTL1-004) 43530334-43536234 nonsense_mediated_decay
ENST00000457824 (L3MBTL1-009) 43514549-43529231 processed_transcript
ENST00000468336 (L3MBTL1-008) 43514451-43515565 retained_intron
ENST00000471977 (L3MBTL1-002) 43540151-43548306 processed_transcript
ENST00000473289 (L3MBTL1-016) 43514443-43515264 retained_intron
ENST00000473981 (L3MBTL1-006) 43514708-43516140 processed_transcript
ENST00000483547 (L3MBTL1-013) 43534636-43535937 retained_intron
ENST00000485334 (L3MBTL1-017) 43528657-43534403 retained_intron
ENST00000494117 (L3MBTL1-018) 43538975-43541894 retained_intron
ENST00000497347 (L3MBTL1-012) 43530744-43535840 retained_intron
ENSG00000201372 (RNU6-1251P)
RNA, U6 small nuclear 1251, pseudogene 		ENST00000364502 (RNU6-1251P-201) 43473013-43473119 snRNA
ENSG00000234271 (RP1-138B7.4)
 ENST00000432727 (RP1-138B7.4-001) 43523261-43523572 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_00044L_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000016921-ENSMUSG00000035576 CGP 10090 2:162931528-162974522
GeneTranscriptPositionBiotype
ENSMUSG00000016921 (Srsf6)
serine/arginine-rich splicing factor 6 		ENSMUST00000017065 (Srsf6-002) 162931562-162935026 processed_transcript
ENSMUST00000126163 (Srsf6-003) 162931661-162933509 processed_transcript
ENSMUST00000130411 (Srsf6-001) 162931528-162937121 protein_coding
ENSMUSG00000035576 (L3mbtl1)
l(3)mbt-like (Drosophila) 		ENSMUST00000035751 (L3mbtl1-001) 162943474-162974522 protein_coding
ENSMUST00000124264 (L3mbtl1-006) 162948005-162949539 protein_coding
ENSMUST00000125296 (L3mbtl1-007) 162948005-162949539 processed_transcript
ENSMUST00000137108 (L3mbtl1-005) 162943475-162948887 processed_transcript
ENSMUST00000149447 (L3mbtl1-002) 162943500-162947245 processed_transcript
ENSMUST00000153416 (L3mbtl1-003) 162943472-162972021 retained_intron
ENSMUST00000156954 (L3mbtl1-004) 162943475-162948887 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00044L_0001ENSG00000124193ENST00000244020ENST00000483871ENSG00000185513ENST00000373133ENST00000373134ENST00000373135ENST00000418998ENST00000422861ENST00000427442ENST00000430781ENST00000434666ENST00000439769ENST00000445228ENST00000457824ENST00000468336ENST00000471977ENST00000473289ENST00000473981ENST00000483547ENST00000485334ENST00000494117ENST00000497347ENSG00000201372ENST00000364502ENSG00000234271ENST00000432727CIL_00044L_0002ENSMUSG00000016921ENSMUST00000017065ENSMUST00000126163ENSMUST00000130411ENSMUSG00000035576ENSMUST00000035751ENSMUST00000124264ENSMUST00000125296ENSMUST00000137108ENSMUST00000149447ENSMUST00000153416ENSMUST00000156954
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00044L_0001ENSG00000124193ENST00000244020ENST00000483871ENSG00000185513ENST00000373133ENST00000373134ENST00000373135ENST00000418998ENST00000422861ENST00000430781ENST00000445228ENST00000457824ENST00000494117ENSG00000201372ENST00000364502ENSG00000234271ENST00000432727CIL_00044L_0002ENSMUSG00000016921ENSMUST00000017065ENSMUST00000130411ENSMUSG00000035576ENSMUST00000035751ENSMUST00000124264ENSMUST00000125296ENSMUST00000137108ENSMUST00000149447ENSMUST00000153416ENSMUST00000156954
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000124193 ENST00000244020 N/A N/A 4.868±0.00 4.639±0.00 9.254±0.00 5.514±0.00 1.568±0.00 3.572±0.00 N/A 5.785±0.00 0.892±0.00 6.513±2.49 3.494±2.52 N/A
ENST00000483871 4.229±0.00 N/A 19.393±0.00 9.697±0.00 28.921±0.00 18.687±11.15 6.220±0.13 19.183±1.43 14.049±2.78 14.525±5.93 5.995±3.13 36.233±10.68 14.940±1.88 34.915±15.92
ENSG00000185513 ENST00000373133 0.501±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.308±0.00 N/A 1.207±0.47 N/A N/A
ENST00000373134 N/A N/A N/A N/A N/A N/A 0.369±0.00 N/A N/A N/A 0.153±0.00 N/A 0.307±0.00 N/A
ENST00000373135 N/A N/A N/A 0.904±0.00 0.491±0.00 N/A N/A N/A N/A N/A N/A 0.822±0.00 N/A N/A
ENST00000418998 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.258±0.00 N/A N/A N/A N/A
ENST00000422861 0.386±0.00 1.023±0.00 N/A 2.147±0.00 N/A 0.265±0.00 N/A N/A N/A 0.145±0.00 0.210±0.00 2.165±0.00 0.218±0.03 0.628±0.00
ENST00000427442 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000430781 N/A N/A N/A N/A N/A N/A N/A N/A 1.054±0.00 N/A N/A N/A 1.191±0.00 5.947±0.00
ENST00000434666 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000439769 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000445228 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.391±0.00 N/A N/A N/A
ENST00000457824 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.007±0.00 N/A N/A N/A N/A
ENST00000468336 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471977 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473289 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473981 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483547 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485334 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494117 N/A N/A N/A N/A N/A N/A 0.135±0.00 N/A N/A 0.216±0.00 N/A 1.760±0.00 N/A 1.505±0.82
ENST00000497347 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000201372 ENST00000364502 N/A N/A N/A 0.194±0.00 N/A N/A 0.555±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000234271 ENST00000432727 N/A 0.108±0.00 0.723±0.00 0.654±0.00 0.165±0.00 N/A 0.051±0.00 N/A 0.097±0.00 0.098±0.00 N/A 1.018±1.06 N/A 0.291±0.24
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000016921 ENSMUST00000017065 25.385±10.14 N/A 64.212±18.95 57.687±10.48 22.156±2.66 N/A 15.051±3.30 13.540±4.06 47.866±11.48 14.374±4.16 13.922±1.88 126.831±77.85 95.230±68.49 28.946±6.28
ENSMUST00000126163 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130411 21.414±9.32 403.551±147.17 24.102±10.39 48.992±34.19 41.499±23.85 39.146±3.54 7.550±2.52 20.868±8.58 31.363±16.07 24.333±2.93 3.077±0.27 132.928±96.82 16.972±8.94 9.279±3.81
ENSMUSG00000035576 ENSMUST00000035751 0.010±0.00 N/A N/A N/A 0.019±0.01 0.058±0.04 0.032±0.02 0.036±0.01 0.016±0.00 0.019±0.00 0.075±0.00 0.062±0.02 0.061±0.00 0.599±0.00
ENSMUST00000124264 N/A N/A N/A 4.533±0.00 N/A N/A N/A 0.111±0.03 0.075±0.02 N/A 0.121±0.00 N/A 0.300±0.05 0.434±0.00
ENSMUST00000125296 N/A N/A N/A N/A N/A N/A N/A N/A 0.148±0.00 N/A N/A 0.216±0.00 N/A 1.659±0.00
ENSMUST00000137108 N/A 0.191±0.03 N/A N/A 0.148±0.00 N/A N/A N/A N/A N/A N/A 0.098±0.00 N/A N/A
ENSMUST00000149447 N/A N/A N/A N/A N/A N/A N/A 0.145±0.00 N/A N/A N/A N/A 0.197±0.00 N/A
ENSMUST00000153416 0.013±0.01 0.050±0.02 N/A 0.902±0.20 0.009±0.00 0.040±0.02 0.011±0.00 0.025±0.02 0.032±0.02 0.024±0.00 0.007±0.00 0.033±0.02 0.059±0.02 0.296±0.00
ENSMUST00000156954 N/A 0.096±0.06 N/A N/A N/A N/A N/A N/A N/A 0.079±0.04 N/A 0.141±0.06 N/A N/A

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