C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rho family GTPase 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000375734 RND3-002 ENSG00000115963 9606 - 2:150468195-150487667 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000375734
Transcript ID Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000375734 1.781±0.00 5.955±0.00 4.431±0.00 2.253±0.00 7.037±0.00 4.209±0.00 1.787±0.00 0.841±0.27 8.152±3.08 5.527±4.00 1.021±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007DZ CIL_0007DZ_0001 CGP 2:149569634-150539011
CIL_0008JE CIL_0008JE_0001 VISTA 2:150026360-150628958

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 TAS GTPase activity
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005794 IEA Golgi apparatus
GO:0005925 IDA focal adhesion
GO:0006184 TAS:IEA GTP catabolic process
GO:0007155 TAS cell adhesion
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0030036 TAS actin cytoskeleton organization
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000017288 Rnd3-001 protein_coding Mus_musculus 0 1273
ENSMUST00000154545 Rnd3-002 protein_coding Mus_musculus 0 887
ENSMUST00000140864 Rnd3-003 retained_intron Mus_musculus 0 697

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