C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DEAD (Asp-Glu-Ala-Asp) box polypeptide 27
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000018143 Ddx27-001 ENSMUSG00000017999 10090 + 2:167015193-167034947 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000018143
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000018143 8.505±4.57 13.005±2.09 8.839±3.10 10.796±1.83 9.540±5.54 8.284±1.23 2.585±0.65 6.498±1.59 15.911±13.74 4.950±2.16 3.581±0.34 12.593±6.85 25.996±14.35 10.784±5.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001T2 CIL_0001T2_0002 CGP 2:166947549-167034947
CIL_000279 CIL_000279_0002 CGP 2:167015193-167063015

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0006200 IEA ATP catabolic process
GO:0008026 IEA ATP-dependent helicase activity
GO:0008150 ND biological_process
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000019620 ddx23-001 protein_coding Danio_rerio 0.0002 53
ENST00000371754 ZNFX1-004 protein_coding Homo_sapiens 1e-38 167
ENST00000371764 DDX27-001 protein_coding Homo_sapiens 0 2789
ENST00000462328 DDX27-004 nonsense_mediated_decay Homo_sapiens 0 472
ENST00000469991 ZNFX1-005 processed_transcript Homo_sapiens 1e-39 167
ENST00000471144 DDX27-006 retained_intron Homo_sapiens 0 889
ENST00000484427 DDX27-002 retained_intron Homo_sapiens 0 1544
ENST00000493252 DDX27-005 protein_coding Homo_sapiens 0 688
ENST00000618172 DDX27-007 protein_coding Homo_sapiens 0 2789
ENST00000622530 DDX27-201 protein_coding Homo_sapiens 0 2789

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