C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001T2_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000124214-ENSG00000124228 CGP 9606 20:49113339-49244077
GeneTranscriptPositionBiotype
ENSG00000124201 (ZNFX1)
zinc finger, NFX1-type containing 1 		ENST00000371744 (ZNFX1-002) 49255808-49278041 protein_coding
ENST00000371752 (ZNFX1-001) 49245897-49278065 protein_coding
ENST00000371754 (ZNFX1-004) 49237946-49278426 protein_coding
ENST00000396105 (ZNFX1-201) 49245900-49278219 protein_coding
ENST00000455070 (ZNFX1-003) 49255933-49271223 protein_coding
ENST00000469991 (ZNFX1-005) 49238943-49244752 processed_transcript
ENSG00000124214 (STAU1)
staufen double-stranded RNA binding protein 1 		ENST00000340954 (STAU1-004) 49113523-49188367 protein_coding
ENST00000347458 (STAU1-003) 49113523-49188367 protein_coding
ENST00000360426 (STAU1-002) 49113523-49188367 protein_coding
ENST00000371792 (STAU1-007) 49113523-49188367 protein_coding
ENST00000371802 (STAU1-006) 49113523-49188367 protein_coding
ENST00000371828 (STAU1-201) 49113341-49188367 protein_coding
ENST00000371856 (STAU1-001) 49113339-49188367 protein_coding
ENST00000437404 (STAU1-005) 49124375-49188367 protein_coding
ENST00000456866 (STAU1-008) 49151582-49174263 protein_coding
ENST00000614381 (STAU1-202) 49113341-49154068 protein_coding
ENSG00000124228 (DDX27)
DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 		ENST00000371764 (DDX27-001) 49219347-49244077 protein_coding
ENST00000462328 (DDX27-004) 49219432-49226466 nonsense_mediated_decay
ENST00000471144 (DDX27-006) 49233838-49244077 retained_intron
ENST00000484427 (DDX27-002) 49219347-49244077 retained_intron
ENST00000493252 (DDX27-005) 49224954-49233643 protein_coding
ENST00000618172 (DDX27-007) 49219416-49244070 protein_coding
ENST00000622530 (DDX27-201) 49219295-49244075 protein_coding
ENSG00000226284 (ARPC3P1)
actin related protein 2/3 complex, subunit 3 pseudogene 1 		ENST00000437218 (ARPC3P1-001) 49134480-49135012 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0001T2_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000039536-ENSMUSG00000017999 CGP 10090 2:166947549-167034947
GeneTranscriptPositionBiotype
ENSMUSG00000017999 (Ddx27)
DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 		ENSMUST00000018143 (Ddx27-001) 167015193-167034947 protein_coding
ENSMUST00000126409 (Ddx27-003) 167026201-167027862 retained_intron
ENSMUST00000127468 (Ddx27-005) 167033847-167034903 retained_intron
ENSMUST00000138969 (Ddx27-004) 167027542-167028290 retained_intron
ENSMUST00000150571 (Ddx27-002) 167015310-167025813 protein_coding
ENSMUST00000176066 (Ddx27-006) 167015310-167024533 protein_coding
ENSMUSG00000039536 (Stau1)
staufen (RNA binding protein) homolog 1 (Drosophila) 		ENSMUST00000049412 (Stau1-005) 166948147-166996103 protein_coding
ENSMUST00000109235 (Stau1-001) 166947549-166996278 protein_coding
ENSMUST00000109236 (Stau1-002) 166948273-166996299 protein_coding
ENSMUST00000109238 (Stau1-003) 166948147-166996265 protein_coding
ENSMUST00000130104 (Stau1-007) 166963507-166976771 processed_transcript
ENSMUST00000130790 (Stau1-011) 166952907-166963441 retained_intron
ENSMUST00000134664 (Stau1-009) 166949694-166950956 retained_intron
ENSMUST00000142481 (Stau1-006) 166948147-166955384 retained_intron
ENSMUST00000149454 (Stau1-008) 166949246-166951231 retained_intron
ENSMUST00000154506 (Stau1-010) 166952304-166960322 retained_intron
ENSMUST00000184390 (Stau1-004) 166949292-166964716 nonsense_mediated_decay
ENSMUSG00000082665 (Gm11470)
predicted gene 11470 		ENSMUST00000118868 (Gm11470-001) 167007131-167009039 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001T2_0001ENSG00000124201ENST00000371744ENST00000371752ENST00000371754ENST00000396105ENST00000455070ENST00000469991ENSG00000124214ENST00000340954ENST00000347458ENST00000360426ENST00000371792ENST00000371802ENST00000371828ENST00000371856ENST00000437404ENST00000456866ENST00000614381ENSG00000124228ENST00000371764ENST00000462328ENST00000471144ENST00000484427ENST00000493252ENST00000618172ENST00000622530ENSG00000226284ENST00000437218CIL_0001T2_0002ENSMUSG00000017999ENSMUST00000018143ENSMUST00000126409ENSMUST00000127468ENSMUST00000138969ENSMUST00000150571ENSMUST00000176066ENSMUSG00000039536ENSMUST00000049412ENSMUST00000109235ENSMUST00000109236ENSMUST00000109238ENSMUST00000130104ENSMUST00000130790ENSMUST00000134664ENSMUST00000142481ENSMUST00000149454ENSMUST00000154506ENSMUST00000184390ENSMUSG00000082665ENSMUST00000118868
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001T2_0001ENSG00000124201ENST00000371744ENST00000371752ENST00000396105ENSG00000124214ENST00000340954ENST00000347458ENST00000360426ENST00000371792ENST00000371802ENST00000371828ENST00000371856ENST00000614381ENSG00000124228ENST00000371764ENST00000618172ENSG00000226284ENST00000437218CIL_0001T2_0002ENSMUSG00000017999ENSMUST00000018143ENSMUST00000176066ENSMUSG00000039536ENSMUST00000049412ENSMUST00000109235ENSMUST00000109236ENSMUST00000109238ENSMUST00000130790ENSMUST00000142481ENSMUST00000149454ENSMUST00000184390ENSMUSG00000082665ENSMUST00000118868
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000124201 ENST00000371744 N/A N/A N/A N/A N/A N/A 2.308±0.00 N/A 4.489±0.00 N/A N/A N/A N/A N/A
ENST00000371752 4.811±0.00 N/A 1.273±0.00 N/A 7.132±1.91 4.107±1.30 N/A 10.353±0.00 1.404±0.00 11.637±6.45 6.166±3.47 5.908±1.03 8.442±1.36 N/A
ENST00000371754 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000396105 7.417±0.00 5.640±0.00 2.876±0.00 5.321±2.34 5.673±1.04 4.761±1.73 4.698±2.43 4.946±0.00 3.362±1.21 3.088±0.00 3.322±0.00 5.096±2.33 5.703±0.00 9.213±0.00
ENST00000455070 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469991 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000124214 ENST00000340954 N/A N/A N/A N/A N/A 1.576±0.00 N/A N/A N/A N/A N/A N/A 4.589±0.00 4.363±0.00
ENST00000347458 19.066±0.00 9.421±0.00 1.791±0.00 11.044±0.00 15.807±0.00 N/A N/A 9.489±0.00 10.688±0.00 11.351±0.00 N/A 8.493±0.00 N/A 5.736±0.00
ENST00000360426 13.290±0.00 6.205±0.00 N/A 8.726±0.00 N/A 15.226±0.00 4.459±3.48 7.099±2.17 5.185±2.42 5.750±3.63 6.486±4.70 8.729±5.41 14.302±2.39 10.822±0.01
ENST00000371792 N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.604±0.00 0.832±0.00 3.224±0.00 N/A N/A
ENST00000371802 N/A N/A N/A N/A N/A 5.428±3.35 6.036±0.00 N/A N/A N/A N/A N/A N/A 6.899±0.00
ENST00000371828 9.959±0.00 5.350±0.00 1.456±0.00 3.087±1.38 5.774±0.00 N/A N/A N/A 4.919±0.00 6.763±0.00 N/A 7.616±2.58 6.363±0.22 N/A
ENST00000371856 N/A N/A 1.276±0.00 5.220±2.15 N/A 5.062±0.00 4.830±3.64 N/A N/A 2.730±1.53 5.885±0.00 N/A N/A 4.071±0.75
ENST00000437404 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000456866 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000614381 N/A 6.374±0.00 1.385±0.00 6.041±0.00 11.622±4.76 8.213±1.49 2.566±0.00 13.943±2.04 10.795±0.87 4.671±0.00 3.261±1.13 13.311±7.17 12.199±2.50 12.236±0.00
ENSG00000124228 ENST00000371764 N/A N/A 1.880±0.00 2.073±0.00 N/A N/A N/A N/A N/A N/A N/A 5.754±0.00 N/A 20.831±1.75
ENST00000462328 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471144 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484427 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493252 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000618172 16.542±0.00 23.815±0.00 N/A 10.221±0.00 16.183±0.00 11.401±7.12 6.265±0.00 20.056±0.00 4.843±1.46 4.011±0.00 8.182±6.31 32.767±7.75 19.011±1.38 19.042±1.37
ENST00000622530 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000226284 ENST00000437218 N/A 0.372±0.00 1.188±0.00 N/A 0.172±0.00 N/A 0.078±0.00 N/A 0.276±0.00 0.285±0.00 0.038±0.00 0.159±0.05 N/A 0.036±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000017999 ENSMUST00000018143 8.505±4.57 13.005±2.09 8.839±3.10 10.796±1.83 9.540±5.54 8.284±1.23 2.585±0.65 6.498±1.59 15.911±13.74 4.950±2.16 3.581±0.34 12.593±6.85 25.996±14.35 10.784±5.00
ENSMUST00000126409 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000127468 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138969 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150571 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176066 N/A N/A N/A 7.286±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.801±0.00
ENSMUSG00000039536 ENSMUST00000049412 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.250±0.06 8.692±0.13 9.364±4.03 N/A
ENSMUST00000109235 1.891±0.32 N/A 4.090±0.16 7.834±0.59 1.943±0.31 2.006±0.19 1.928±0.10 2.309±0.60 2.286±0.49 1.910±0.04 2.692±0.78 4.368±1.88 5.062±1.25 1.221±0.22
ENSMUST00000109236 4.799±0.85 19.108±7.49 4.082±0.72 8.468±5.04 5.770±1.29 6.158±2.19 2.767±1.04 5.823±0.65 4.722±1.95 4.323±1.18 2.983±0.77 7.789±3.23 17.594±12.24 4.873±1.70
ENSMUST00000109238 4.982±0.23 8.966±0.00 8.643±0.16 9.306±0.72 2.646±0.00 3.369±0.17 2.429±0.45 3.143±0.77 4.423±1.33 3.590±0.82 4.636±0.40 6.457±3.33 14.449±5.52 2.544±0.24
ENSMUST00000130104 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130790 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 79.008±0.00 15.299±0.00
ENSMUST00000134664 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142481 2.447±1.15 N/A 2.874±0.37 5.350±0.03 2.360±0.25 1.958±0.23 1.284±0.13 1.424±0.04 2.007±0.37 2.312±0.21 N/A 3.405±0.90 2.843±0.09 1.549±0.09
ENSMUST00000149454 7.299±0.42 N/A N/A N/A 7.161±0.00 N/A N/A N/A N/A N/A N/A 8.926±1.31 N/A N/A
ENSMUST00000154506 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000184390 N/A N/A N/A 11.268±0.00 N/A N/A N/A N/A N/A N/A N/A 18.291±0.00 N/A 6.555±0.00
ENSMUSG00000082665 ENSMUST00000118868 N/A N/A N/A 0.005±0.00 N/A 0.041±0.00 0.022±0.00 N/A 0.090±0.06 N/A 0.030±0.01 N/A 0.058±0.02 0.019±0.00

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