C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAS-related C3 botulinum substrate 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000018156 Rac3-001 ENSMUSG00000018012 10090 + 11:120721470-120723969 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000018156
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000018156 11.466±5.10 15.415±2.88 2.648±0.00 75.831±51.40 1.755±0.00 7.339±1.35 0.857±0.19 6.719±1.26 0.729±0.24 32.866±9.82 0.300±0.10 20.073±3.39 3.803±3.74 1.467±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004VQ CIL_0004VQ_0002 CGP 11:120713925-120723969
CIL_00043Y CIL_00043Y_0003 CGP 11:120721470-120727281

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 ISS GTPase activity
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005886 IEA plasma membrane
GO:0007264 IEA small GTPase mediated signal transduction
GO:0012505 ISS endomembrane system
GO:0030031 ISS cell projection assembly
GO:0030036 ISS actin cytoskeleton organization
GO:0030426 ISO growth cone
GO:0031175 IDA neuron projection development
GO:0031941 ISO filamentous actin
GO:0033630 ISS positive regulation of cell adhesion mediated by integrin
GO:0043005 ISO neuron projection
GO:0043025 ISO neuronal cell body
GO:0048306 IEA calcium-dependent protein binding
GO:0048471 ISS perinuclear region of cytoplasm
GO:0050885 IMP neuromuscular process controlling balance
GO:0050905 IMP neuromuscular process
GO:0070062 IEA extracellular vesicular exosome
GO:0071944 ISS cell periphery
GO:1900026 ISS positive regulation of substrate adhesion-dependent cell spreading

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000306897 RAC3-001 protein_coding Homo_sapiens 0 1182
ENST00000580965 RAC3-002 protein_coding Homo_sapiens 0 641
ENST00000584341 RAC3-003 protein_coding Homo_sapiens 0 532
ENST00000585014 RAC3-004 retained_intron Homo_sapiens 0 691

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