C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004VQ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000169683-ENSG00000169750 CGP 9606 17:82023302-82034204
GeneTranscriptPositionBiotype
ENSG00000169683 (LRRC45)
leucine rich repeat containing 45 		ENST00000306688 (LRRC45-001) 82023302-82031151 protein_coding
ENST00000577638 (LRRC45-003) 82023922-82025440 protein_coding
ENST00000581227 (LRRC45-005) 82027007-82030632 nonsense_mediated_decay
ENST00000582083 (LRRC45-006) 82028741-82030146 retained_intron
ENST00000583302 (LRRC45-004) 82026806-82029232 retained_intron
ENST00000583383 (LRRC45-002) 82023321-82025425 processed_transcript
ENSG00000169689 (STRA13)
stimulated by retinoic acid 13 		ENST00000306704 (STRA13-001) 82018703-82022918 protein_coding
ENST00000392359 (STRA13-002) 82018703-82022918 protein_coding
ENST00000577379 (STRA13-010) 82018838-82022849 processed_transcript
ENST00000579520 (STRA13-004) 82018702-82024107 protein_coding
ENST00000580090 (STRA13-007) 82018844-82022873 processed_transcript
ENST00000580435 (STRA13-003) 82018703-82022892 protein_coding
ENST00000583767 (STRA13-009) 82018866-82022852 processed_transcript
ENST00000584347 (STRA13-006) 82018801-82022879 protein_coding
ENST00000584514 (STRA13-011) 82018716-82022821 processed_transcript
ENST00000584600 (STRA13-008) 82018703-82022858 protein_coding
ENST00000585091 (STRA13-005) 82019157-82022884 retained_intron
ENSG00000169750 (RAC3)
ras-related C3 botulinum toxin substrate 3 (rho family, small GTP binding protein Rac3) 		ENST00000306897 (RAC3-001) 82031624-82034202 protein_coding
ENST00000580965 (RAC3-002) 82032061-82033790 protein_coding
ENST00000584341 (RAC3-003) 82032184-82033772 protein_coding
ENST00000585014 (RAC3-004) 82032878-82034204 retained_intron
ENSG00000275682 (AC137723.1)
 ENST00000612169 (AC137723.1-201) 82024633-82024692 miRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0004VQ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000025145-ENSMUSG00000018012 CGP 10090 11:120713925-120723969
GeneTranscriptPositionBiotype
ENSMUSG00000018012 (Rac3)
RAS-related C3 botulinum substrate 3 		ENSMUST00000018156 (Rac3-001) 120721470-120723969 protein_coding
ENSMUST00000134322 (Rac3-003) 120722014-120723565 processed_transcript
ENSMUST00000142229 (Rac3-002) 120721573-120723606 protein_coding
ENSMUSG00000025145 (Lrrc45)
leucine rich repeat containing 45 		ENSMUST00000026139 (Lrrc45-001) 120713925-120721128 protein_coding
ENSMUST00000145781 (Lrrc45-002) 120713951-120721123 nonsense_mediated_decay
ENSMUST00000150225 (Lrrc45-004) 120717515-120719972 retained_intron
ENSMUST00000151852 (Lrrc45-003) 120713978-120715554 protein_coding
ENSMUST00000155187 (Lrrc45-005) 120719731-120720912 retained_intron

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004VQ_0001ENSG00000169683ENST00000306688ENST00000577638ENST00000581227ENST00000582083ENST00000583302ENST00000583383ENSG00000169689ENST00000306704ENST00000392359ENST00000577379ENST00000579520ENST00000580090ENST00000580435ENST00000583767ENST00000584347ENST00000584514ENST00000584600ENST00000585091ENSG00000169750ENST00000306897ENST00000580965ENST00000584341ENST00000585014ENSG00000275682ENST00000612169CIL_0004VQ_0002ENSMUSG00000018012ENSMUST00000018156ENSMUST00000134322ENSMUST00000142229ENSMUSG00000025145ENSMUST00000026139ENSMUST00000145781ENSMUST00000150225ENSMUST00000151852ENSMUST00000155187
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004VQ_0001ENSG00000169683ENST00000306688ENST00000577638ENST00000581227ENST00000582083ENST00000583302ENSG00000169689ENST00000306704ENST00000392359ENST00000579520ENST00000580090ENST00000580435ENST00000584514ENST00000584600ENSG00000169750ENST00000306897ENST00000580965ENST00000584341ENST00000585014ENSG00000275682ENST00000612169CIL_0004VQ_0002ENSMUSG00000018012ENSMUST00000018156ENSMUST00000134322ENSMUST00000142229ENSMUSG00000025145ENSMUST00000026139ENSMUST00000145781ENSMUST00000150225ENSMUST00000155187
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000169683 ENST00000306688 2.121±0.00 3.868±0.00 0.106±0.00 1.475±0.58 4.458±0.00 2.270±1.52 0.968±0.82 2.955±2.08 2.352±2.01 4.259±0.00 1.276±0.00 4.674±2.71 6.377±1.14 3.389±0.66
ENST00000577638 N/A N/A 0.388±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000581227 N/A N/A N/A N/A N/A N/A 0.194±0.00 N/A N/A N/A 0.061±0.00 N/A N/A N/A
ENST00000582083 N/A N/A 0.578±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583302 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.358±0.00 N/A N/A N/A N/A
ENST00000583383 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000169689 ENST00000306704 5.845±0.00 17.294±0.00 N/A 7.123±4.93 9.470±0.00 14.665±0.00 6.457±0.00 21.760±0.00 9.616±0.00 12.883±0.00 6.834±0.00 14.396±1.70 19.847±0.74 16.775±0.00
ENST00000392359 11.225±0.00 7.088±0.00 N/A 5.268±0.00 13.331±0.00 N/A N/A 2.303±0.00 3.852±3.06 8.843±8.09 N/A 9.608±6.65 15.595±0.88 7.087±0.10
ENST00000577379 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000579520 N/A N/A 0.444±0.00 N/A N/A N/A 0.303±0.00 N/A 0.312±0.00 N/A N/A N/A N/A N/A
ENST00000580090 N/A N/A N/A N/A N/A N/A N/A 2.329±0.00 N/A N/A N/A 0.525±0.00 N/A 7.158±0.00
ENST00000580435 N/A N/A 0.242±0.00 N/A N/A 6.457±0.00 N/A N/A N/A 0.626±0.00 0.205±0.00 1.222±0.00 12.809±0.00 N/A
ENST00000583767 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584347 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584514 N/A N/A N/A N/A 0.543±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584600 N/A 5.773±0.00 N/A N/A N/A 5.134±3.75 2.010±1.73 10.537±0.00 7.887±0.00 N/A N/A N/A N/A 6.757±0.00
ENST00000585091 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000169750 ENST00000306897 2.675±0.00 N/A N/A 3.232±0.00 5.071±0.00 0.702±0.00 N/A 1.729±0.00 1.202±0.00 N/A 0.184±0.00 2.441±1.45 8.590±5.82 10.294±5.53
ENST00000580965 1.795±0.00 N/A N/A 4.308±0.00 2.378±1.66 0.559±0.00 N/A 1.375±0.00 2.665±0.00 0.574±0.00 N/A 8.467±7.38 7.710±6.12 11.973±3.05
ENST00000584341 N/A N/A 4.363±0.00 8.105±0.00 N/A 0.780±0.29 0.248±0.03 2.775±0.88 N/A 1.026±0.00 N/A 4.321±0.00 N/A N/A
ENST00000585014 1.806±0.00 0.346±0.00 0.623±0.00 N/A N/A N/A N/A N/A N/A 0.529±0.00 N/A N/A N/A N/A
ENSG00000275682 ENST00000612169 1.537±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000018012 ENSMUST00000018156 11.466±5.10 15.415±2.88 2.648±0.00 75.831±51.40 1.755±0.00 7.339±1.35 0.857±0.19 6.719±1.26 0.729±0.24 32.866±9.82 0.300±0.10 20.073±3.39 3.803±3.74 1.467±0.01
ENSMUST00000134322 5.595±0.00 N/A N/A N/A 1.102±0.69 3.408±0.00 0.391±0.19 1.274±0.19 0.400±0.11 N/A 0.207±0.00 6.123±0.00 1.654±0.95 0.610±0.00
ENSMUST00000142229 N/A N/A 3.756±0.00 129.156±79.62 2.099±0.00 N/A 0.266±0.00 N/A 0.724±0.42 N/A 0.472±0.20 8.982±2.38 3.137±0.99 0.664±0.00
ENSMUSG00000025145 ENSMUST00000026139 5.400±2.23 2.215±0.00 9.147±1.74 13.318±6.68 3.960±0.83 5.350±2.11 1.015±0.46 2.775±0.79 2.942±1.57 9.596±0.00 1.391±0.52 20.400±23.69 5.995±4.17 2.858±2.22
ENSMUST00000145781 4.328±1.73 4.682±0.00 6.750±1.62 27.824±7.28 4.177±1.07 3.721±0.82 0.642±0.15 2.538±1.18 1.361±0.38 N/A 1.023±0.29 11.378±1.15 0.972±0.13 1.397±0.40
ENSMUST00000150225 9.834±4.74 10.764±3.96 13.211±0.07 21.185±5.37 7.553±0.89 9.588±1.80 2.007±0.64 3.647±0.60 2.841±0.85 N/A 1.292±0.30 21.633±4.70 2.789±0.78 2.227±0.39
ENSMUST00000151852 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155187 N/A N/A N/A N/A N/A N/A N/A 3.549±0.54 1.205±0.00 N/A N/A N/A N/A N/A

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