C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00043Y_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000020795-ENSDARG00000079271 CGP 7955 12:3614629-3645629
GeneTranscriptPositionBiotype
ENSDARG00000020795 (rac3b)
ras-related C3 botulinum toxin substrate 3b (rho family, small GTP binding protein Rac3) 		ENSDART00000044690 (rac3b-201) 3614629-3633775 protein_coding
ENSDART00000122905 (rac3b-001) 3614629-3633776 protein_coding
ENSDARG00000079271 (dcxr)
dicarbonyl/L-xylulose reductase 		ENSDART00000023796 (dcxr-001) 3635055-3645620 protein_coding
ENSDART00000137148 (dcxr-003) 3636857-3645629 protein_coding
ENSDART00000139721 (dcxr-002) 3641113-3645446 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_00043Y_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000169750-ENSG00000169738 CGP 9606 17:82031624-82037732
GeneTranscriptPositionBiotype
ENSG00000169738 (DCXR)
dicarbonyl/L-xylulose reductase 		ENST00000306869 (DCXR-001) 82035858-82037732 protein_coding
ENST00000577286 (DCXR-019) 82035881-82036635 retained_intron
ENST00000577532 (DCXR-015) 82035136-82036995 protein_coding
ENST00000577712 (DCXR-010) 82036293-82037680 protein_coding
ENST00000577996 (DCXR-020) 82036284-82036581 processed_transcript
ENST00000578273 (DCXR-003) 82035996-82037702 retained_intron
ENST00000578885 (DCXR-008) 82035896-82037681 retained_intron
ENST00000579004 (DCXR-021) 82035879-82036412 protein_coding
ENST00000579155 (DCXR-006) 82036393-82037689 protein_coding
ENST00000579334 (DCXR-009) 82035879-82037681 retained_intron
ENST00000579821 (DCXR-018) 82036021-82036927 nonsense_mediated_decay
ENST00000579842 (DCXR-016) 82035881-82036987 retained_intron
ENST00000580320 (DCXR-004) 82035879-82037698 retained_intron
ENST00000580750 (DCXR-005) 82035881-82037697 retained_intron
ENST00000581584 (DCXR-011) 82035968-82037677 protein_coding
ENST00000582074 (DCXR-017) 82035904-82036928 retained_intron
ENST00000582613 (DCXR-013) 82036521-82037309 retained_intron
ENST00000582900 (DCXR-007) 82036018-82037687 protein_coding
ENST00000584318 (DCXR-014) 82036568-82037230 processed_transcript
ENST00000585085 (DCXR-012) 82036216-82037342 retained_intron
ENST00000585164 (DCXR-002) 82036633-82037709 retained_intron
ENSG00000169750 (RAC3)
ras-related C3 botulinum toxin substrate 3 (rho family, small GTP binding protein Rac3) 		ENST00000306897 (RAC3-001) 82031624-82034202 protein_coding
ENST00000580965 (RAC3-002) 82032061-82033790 protein_coding
ENST00000584341 (RAC3-003) 82032184-82033772 protein_coding
ENST00000585014 (RAC3-004) 82032878-82034204 retained_intron
ENSG00000279372 (RP11-1182P23.5)
 ENST00000623540 (RP11-1182P23.5-001) 82035403-82035800 TEC

Homo sapiens Ensembl (GRCh38)

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CIL_00043Y_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000018012-ENSMUSG00000039450 CGP 10090 11:120721470-120727281
GeneTranscriptPositionBiotype
ENSMUSG00000018012 (Rac3)
RAS-related C3 botulinum substrate 3 		ENSMUST00000018156 (Rac3-001) 120721470-120723969 protein_coding
ENSMUST00000134322 (Rac3-003) 120722014-120723565 processed_transcript
ENSMUST00000142229 (Rac3-002) 120721573-120723606 protein_coding
ENSMUSG00000039450 (Dcxr)
dicarbonyl L-xylulose reductase 		ENSMUST00000026144 (Dcxr-001) 120725399-120727281 protein_coding
ENSMUST00000106148 (Dcxr-002) 120725399-120727243 protein_coding
ENSMUST00000122883 (Dcxr-003) 120725455-120727229 processed_transcript
ENSMUST00000125242 (Dcxr-004) 120725425-120727244 retained_intron

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00043Y_0001ENSDARG00000020795ENSDART00000044690ENSDART00000122905ENSDARG00000079271ENSDART00000023796ENSDART00000137148ENSDART00000139721CIL_00043Y_0002ENSG00000169738ENST00000306869ENST00000577286ENST00000577532ENST00000577712ENST00000577996ENST00000578273ENST00000578885ENST00000579004ENST00000579155ENST00000579334ENST00000579821ENST00000579842ENST00000580320ENST00000580750ENST00000581584ENST00000582074ENST00000582613ENST00000582900ENST00000584318ENST00000585085ENST00000585164ENSG00000169750ENST00000306897ENST00000580965ENST00000584341ENST00000585014ENSG00000279372ENST00000623540CIL_00043Y_0003ENSMUSG00000018012ENSMUST00000018156ENSMUST00000134322ENSMUST00000142229ENSMUSG00000039450ENSMUST00000026144ENSMUST00000106148ENSMUST00000122883ENSMUST00000125242
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00043Y_0001ENSDARG00000020795ENSDART00000044690ENSDART00000122905ENSDARG00000079271ENSDART00000023796ENSDART00000137148ENSDART00000139721CIL_00043Y_0002ENSG00000169738ENST00000306869ENST00000577286ENST00000577712ENST00000578885ENST00000579004ENST00000579334ENST00000579821ENST00000579842ENST00000580320ENST00000580750ENST00000581584ENST00000582074ENST00000582613ENST00000582900ENSG00000169750ENST00000306897ENST00000580965ENST00000584341ENST00000585014ENSG00000279372ENST00000623540CIL_00043Y_0003ENSMUSG00000018012ENSMUST00000018156ENSMUST00000134322ENSMUST00000142229ENSMUSG00000039450ENSMUST00000026144ENSMUST00000106148ENSMUST00000122883ENSMUST00000125242
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000020795 ENSDART00000044690 N/A N/A N/A 11.045±0.00 N/A N/A 1.250±0.00 N/A 0.064±0.00 N/A 1.502±0.00 N/A N/A N/A
ENSDART00000122905 N/A N/A N/A 68.162±13.15 N/A N/A 0.495±0.17 0.920±0.05 N/A N/A 1.152±0.00 N/A N/A N/A
ENSDARG00000079271 ENSDART00000023796 N/A N/A N/A 1.101±0.38 N/A N/A 2.137±1.54 1.993±1.35 N/A N/A 1.761±0.00 N/A N/A N/A
ENSDART00000137148 N/A N/A N/A 1.216±0.05 N/A N/A 0.403±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000139721 N/A N/A N/A N/A N/A N/A N/A N/A 0.738±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000169738 ENST00000306869 13.182±0.00 4.819±0.00 7.068±0.00 2.111±0.00 7.040±6.66 1.157±0.00 1.093±0.00 170.430±0.00 51.434±50.70 0.762±0.00 25.959±0.00 35.756±4.60 38.187±20.41 16.495±0.00
ENST00000577286 N/A N/A N/A 4.657±0.00 N/A N/A 3.202±0.00 79.897±0.00 N/A N/A N/A 18.259±0.00 15.007±0.00 N/A
ENST00000577532 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000577712 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.155±0.00 N/A 0.160±0.00 N/A N/A
ENST00000577996 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000578273 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000578885 N/A N/A N/A N/A 0.394±0.00 0.230±0.00 N/A N/A 0.646±0.00 N/A N/A N/A N/A 7.195±0.00
ENST00000579004 N/A N/A N/A N/A N/A N/A 1.760±0.00 N/A N/A N/A N/A 0.452±0.00 N/A N/A
ENST00000579155 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000579334 N/A N/A 1.050±0.00 N/A N/A 5.006±0.00 15.926±0.00 N/A N/A N/A N/A N/A N/A 7.230±0.00
ENST00000579821 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 36.009±0.00 38.080±0.00 24.854±0.00
ENST00000579842 N/A N/A N/A 1.795±0.00 N/A N/A 13.482±0.00 13.733±0.00 N/A N/A 12.804±0.00 17.313±0.00 N/A 8.961±0.00
ENST00000580320 12.915±0.00 15.420±0.00 N/A 16.986±16.11 28.012±0.00 17.311±0.00 N/A 38.074±0.00 91.874±91.66 47.834±0.00 18.122±15.34 N/A 17.787±0.00 N/A
ENST00000580750 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.362±0.00 N/A N/A
ENST00000581584 N/A N/A N/A N/A N/A 0.398±0.00 N/A N/A N/A 1.477±0.00 N/A 0.100±0.00 N/A N/A
ENST00000582074 N/A N/A N/A N/A N/A 0.318±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000582613 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.249±0.00 N/A N/A
ENST00000582900 28.884±0.00 6.396±0.00 N/A 19.706±0.00 38.378±0.00 16.479±0.00 16.389±0.00 25.979±0.00 126.653±0.00 N/A 36.708±0.00 24.294±8.03 32.423±0.00 25.329±0.71
ENST00000584318 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000585085 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000585164 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000169750 ENST00000306897 2.675±0.00 N/A N/A 3.232±0.00 5.071±0.00 0.702±0.00 N/A 1.729±0.00 1.202±0.00 N/A 0.184±0.00 2.441±1.45 8.590±5.82 10.294±5.53
ENST00000580965 1.795±0.00 N/A N/A 4.308±0.00 2.378±1.66 0.559±0.00 N/A 1.375±0.00 2.665±0.00 0.574±0.00 N/A 8.467±7.38 7.710±6.12 11.973±3.05
ENST00000584341 N/A N/A 4.363±0.00 8.105±0.00 N/A 0.780±0.29 0.248±0.03 2.775±0.88 N/A 1.026±0.00 N/A 4.321±0.00 N/A N/A
ENST00000585014 1.806±0.00 0.346±0.00 0.623±0.00 N/A N/A N/A N/A N/A N/A 0.529±0.00 N/A N/A N/A N/A
ENSG00000279372 ENST00000623540 N/A N/A N/A 0.349±0.11 N/A 0.306±0.13 0.043±0.00 2.150±0.00 0.215±0.00 N/A N/A 0.109±0.02 0.275±0.09 0.261±0.09
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000018012 ENSMUST00000018156 11.466±5.10 15.415±2.88 2.648±0.00 75.831±51.40 1.755±0.00 7.339±1.35 0.857±0.19 6.719±1.26 0.729±0.24 32.866±9.82 0.300±0.10 20.073±3.39 3.803±3.74 1.467±0.01
ENSMUST00000134322 5.595±0.00 N/A N/A N/A 1.102±0.69 3.408±0.00 0.391±0.19 1.274±0.19 0.400±0.11 N/A 0.207±0.00 6.123±0.00 1.654±0.95 0.610±0.00
ENSMUST00000142229 N/A N/A 3.756±0.00 129.156±79.62 2.099±0.00 N/A 0.266±0.00 N/A 0.724±0.42 N/A 0.472±0.20 8.982±2.38 3.137±0.99 0.664±0.00
ENSMUSG00000039450 ENSMUST00000026144 25.855±3.45 48.912±1.75 12.909±2.07 1.817±0.70 17.837±6.65 67.743±6.65 4.079±1.24 230.113±19.92 73.289±66.32 83.529±2.59 1.701±0.41 66.373±28.27 7.315±6.24 1.074±0.20
ENSMUST00000106148 27.047±2.63 33.347±2.53 13.762±1.70 2.045±0.42 17.960±1.22 28.229±2.12 7.742±1.06 155.057±8.62 37.098±39.36 62.371±3.42 4.641±1.11 39.159±15.36 2.887±2.76 0.798±0.37
ENSMUST00000122883 N/A N/A N/A 0.327±0.00 N/A N/A 2.084±0.00 N/A N/A 21.264±0.68 N/A N/A N/A 0.328±0.00
ENSMUST00000125242 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.241±0.00 0.517±0.23 0.258±0.00

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