C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ras-related C3 botulinum toxin substrate 3 (rho family, small GTP binding protein Rac3)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000580965 RAC3-002 ENSG00000169750 9606 + 17:82032061-82033790 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENST00000580965
Transcript ID Adipose Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000580965 1.795±0.00 4.308±0.00 2.378±1.66 0.559±0.00 1.375±0.00 2.665±0.00 0.574±0.00 8.467±7.38 7.710±6.12 11.973±3.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004VQ CIL_0004VQ_0001 CGP 17:82023302-82034204
CIL_00043Y CIL_00043Y_0002 CGP 17:82031624-82037732

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0006184 IEA GTP catabolic process
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000134322 Rac3-003 processed_transcript Mus_musculus 0 641
ENSMUST00000142229 Rac3-002 protein_coding Mus_musculus 0 641
ENSMUST00000018156 Rac3-001 protein_coding Mus_musculus 0 641

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