C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vacuole membrane protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000018315 Vmp1-001 ENSMUSG00000018171 10090 - 11:86583865-86683836 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000018315
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000018315 7.594±0.35 2.686±0.72 20.469±4.05 11.860±1.93 6.406±1.45 4.606±0.55 5.339±0.72 11.618±1.43 14.242±4.19 8.050±1.15 5.473±4.68 5.730±4.31 27.269±8.02 3.732±1.50

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008VS CIL_0008VS_0002 VISTA 11:86270110-86871719
CIL_0008Y2 CIL_0008Y2_0002 VISTA 11:86286196-86887829
CIL_00081F CIL_00081F_0002 VISTA 11:86323484-86925483

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000407 IDA pre-autophagosomal structure
GO:0000421 ISS autophagic vacuole membrane
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005783 ISS endoplasmic reticulum
GO:0005886 IEA plasma membrane
GO:0006914 IEA autophagy
GO:0007566 IDA embryo implantation
GO:0010506 IDA regulation of autophagy
GO:0016021 IEA integral component of membrane
GO:0016337 ISS single organismal cell-cell adhesion
GO:0034329 ISS cell junction assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262291 VMP1-001 protein_coding Homo_sapiens 0 1978
ENST00000536180 VMP1-201 protein_coding Homo_sapiens 0 1469
ENST00000585847 VMP1-009 nonsense_mediated_decay Homo_sapiens 0 431
ENST00000586245 VMP1-011 nonsense_mediated_decay Homo_sapiens 0 457
ENST00000587259 VMP1-007 protein_coding Homo_sapiens 0 412
ENST00000587470 VMP1-012 retained_intron Homo_sapiens 0 497
ENST00000587945 VMP1-008 protein_coding Homo_sapiens 0 693
ENST00000588131 VMP1-005 retained_intron Homo_sapiens 0 409
ENST00000588617 VMP1-013 processed_transcript Homo_sapiens 0 466
ENST00000589823 VMP1-017 protein_coding Homo_sapiens 0 658
ENST00000591315 VMP1-003 protein_coding Homo_sapiens 0 592
ENST00000591782 VMP1-016 processed_transcript Homo_sapiens 0 496
ENST00000591877 VMP1-014 protein_coding Homo_sapiens 0 555
ENST00000592106 VMP1-006 protein_coding Homo_sapiens 0 350
ENST00000592619 VMP1-015 nonsense_mediated_decay Homo_sapiens 0 798
ENST00000592790 VMP1-004 retained_intron Homo_sapiens 0 429
ENST00000593168 VMP1-010 nonsense_mediated_decay Homo_sapiens 0 431

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