C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GTPase activating protein (SH3 domain) binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000018727 G3bp1-001 ENSMUSG00000018583 10090 + 11:55469685-55504838 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000018727
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000018727 16.598±6.47 20.658±1.99 18.759±0.77 15.558±6.08 15.449±1.90 17.414±0.89 10.339±0.79 13.708±0.79 14.454±7.40 12.465±0.38 14.111±1.95 23.185±2.13 22.582±15.02 3.115±1.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001U9 CIL_0001U9_0002 CGP 11:55469685-55608198

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003729 IDA mRNA binding
GO:0004386 IEA helicase activity
GO:0004519 IEA endonuclease activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0005925 IEA focal adhesion
GO:0006810 IEA transport
GO:0010494 IDA cytoplasmic stress granule
GO:0044822 IEA poly(A) RNA binding
GO:0090090 IMP negative regulation of canonical Wnt signaling pathway
GO:0090305 IEA nucleic acid phosphodiester bond hydrolysis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000356245 G3BP1-002 protein_coding Homo_sapiens 0 1592
ENST00000394123 G3BP1-001 protein_coding Homo_sapiens 0 1611
ENST00000413279 AC064850.4-001 processed_pseudogene Homo_sapiens 0 1164
ENST00000507878 G3BP1-009 protein_coding Homo_sapiens 0 405
ENST00000517947 G3BP1-010 nonsense_mediated_decay Homo_sapiens 0 453
ENST00000518726 G3BP1-003 retained_intron Homo_sapiens 2e-39 167
ENST00000519832 G3BP1-004 retained_intron Homo_sapiens 0 468
ENST00000520006 G3BP1-012 protein_coding Homo_sapiens 0 422
ENST00000520177 G3BP1-006 nonsense_mediated_decay Homo_sapiens 0 1016
ENST00000520578 G3BP1-008 protein_coding Homo_sapiens 0 468
ENST00000522367 G3BP1-011 nonsense_mediated_decay Homo_sapiens 0 466
ENST00000522666 G3BP1-013 nonsense_mediated_decay Homo_sapiens 0 534
ENST00000522761 G3BP1-005 nonsense_mediated_decay Homo_sapiens 0 970
ENST00000523519 G3BP1-007 protein_coding Homo_sapiens 0 422

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