C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GTPase activating protein (SH3 domain) binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000394123 G3BP1-001 ENSG00000145907 9606 + 5:151771910-151812785 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000394123
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000394123 2.544±0.00 1.382±0.00 3.709±0.00 5.003±0.83 2.636±0.00 4.237±0.59 4.706±2.65 6.702±0.00 3.206±1.32 6.911±1.64 3.670±1.74 5.727±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007IC CIL_0007IC_0002 CGP 5:151661096-151772532
CIL_0001U9 CIL_0001U9_0001 CGP 5:151771045-151924842

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003729 IEA mRNA binding
GO:0004003 TAS ATP-dependent DNA helicase activity
GO:0004004 TAS ATP-dependent RNA helicase activity
GO:0004519 IEA endonuclease activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0005886 IEA plasma membrane
GO:0005925 IDA focal adhesion
GO:0006200 TAS ATP catabolic process
GO:0006810 IEA transport
GO:0007265 TAS Ras protein signal transduction
GO:0010494 IEA cytoplasmic stress granule
GO:0032508 TAS DNA duplex unwinding
GO:0044822 IDA poly(A) RNA binding
GO:0090090 IEA negative regulation of canonical Wnt signaling pathway
GO:0090305 IEA nucleic acid phosphodiester bond hydrolysis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000018727 G3bp1-001 protein_coding Mus_musculus 0 1611
ENSMUST00000119397 Gm5913-001 processed_pseudogene Mus_musculus 0 1445
ENSMUST00000121476 Gm7405-001 processed_pseudogene Mus_musculus 0 813
ENSMUST00000121311 Gm14896-001 processed_pseudogene Mus_musculus 0 780
ENSMUST00000151790 G3bp1-002 processed_transcript Mus_musculus 2e-38 167

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