C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001U9_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000145907-ENSG00000145888 CGP 9606 5:151771045-151924842
GeneTranscriptPositionBiotype
ENSG00000145907 (G3BP1)
GTPase activating protein (SH3 domain) binding protein 1 		ENST00000356245 (G3BP1-002) 151771943-151805350 protein_coding
ENST00000394123 (G3BP1-001) 151771910-151812785 protein_coding
ENST00000507878 (G3BP1-009) 151771954-151794222 protein_coding
ENST00000517947 (G3BP1-010) 151771954-151795575 nonsense_mediated_decay
ENST00000518726 (G3BP1-003) 151771952-151787386 retained_intron
ENST00000519832 (G3BP1-004) 151771952-151791750 retained_intron
ENST00000520006 (G3BP1-012) 151772279-151791026 protein_coding
ENST00000520177 (G3BP1-006) 151771954-151805349 nonsense_mediated_decay
ENST00000520578 (G3BP1-008) 151771084-151791063 protein_coding
ENST00000522367 (G3BP1-011) 151771954-151795575 nonsense_mediated_decay
ENST00000522666 (G3BP1-013) 151772504-151797369 nonsense_mediated_decay
ENST00000522761 (G3BP1-005) 151771924-151804225 nonsense_mediated_decay
ENST00000523519 (G3BP1-007) 151771045-151791029 protein_coding
ENSG00000177556 (ATOX1)
antioxidant 1 copper chaperone 		ENST00000313115 (ATOX1-201) 151742823-151758649 protein_coding
ENST00000520382 (ATOX1-004) 151742822-151753895 protein_coding
ENST00000521264 (ATOX1-002) 151742316-151752426 protein_coding
ENST00000522145 (ATOX1-005) 151742822-151746563 retained_intron
ENST00000522314 (ATOX1-006) 151742822-151752118 protein_coding
ENST00000522710 (ATOX1-003) 151746046-151758656 protein_coding
ENST00000524142 (ATOX1-001) 151742822-151772532 protein_coding
ENSG00000270978 (RP11-54C4.2)
 ENST00000603996 (RP11-54C4.2-001) 151848886-151850791 processed_pseudogene
ENSG00000275765 (RP11-54C4.3)
uncharacterized protein LOC100652758 		ENST00000617069 (RP11-54C4.3-201) 151769793-151771508 protein_coding
ENST00000623943 (RP11-54C4.3-001) 151770242-151771508 antisense
CIL_0001U9_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000018583-ENSMUSG00000000263 CGP 10090 11:55469685-55608198
GeneTranscriptPositionBiotype
ENSMUSG00000000263 (Glra1)
glycine receptor, alpha 1 subunit 		ENSMUST00000075603 (Glra1-003) 55514238-55607821 protein_coding
ENSMUST00000102716 (Glra1-002) 55514238-55608198 protein_coding
ENSMUST00000108853 (Glra1-001) 55514238-55607733 protein_coding
ENSMUSG00000018583 (G3bp1)
GTPase activating protein (SH3 domain) binding protein 1 		ENSMUST00000018727 (G3bp1-001) 55469685-55504838 protein_coding
ENSMUST00000151790 (G3bp1-002) 55469718-55487512 processed_transcript
ENSMUSG00000065061 (Gm22884)
predicted gene, 22884 		ENSMUST00000083127 (Gm22884-201) 55482694-55482833 snoRNA
ENSMUSG00000086460 (Gm12236)
predicted gene 12236 		ENSMUST00000152968 (Gm12236-001) 55514846-55527715 antisense
ENSMUSG00000087342 (Gm12238)
predicted gene 12238 		ENSMUST00000127764 (Gm12238-001) 55482706-55482829 sense_intronic

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001U9_0001ENSG00000145907ENST00000356245ENST00000394123ENST00000507878ENST00000517947ENST00000518726ENST00000519832ENST00000520006ENST00000520177ENST00000520578ENST00000522367ENST00000522666ENST00000522761ENST00000523519ENSG00000177556ENST00000313115ENST00000520382ENST00000521264ENST00000522145ENST00000522314ENST00000522710ENST00000524142ENSG00000270978ENST00000603996ENSG00000275765ENST00000617069ENST00000623943CIL_0001U9_0002ENSMUSG00000000263ENSMUST00000075603ENSMUST00000102716ENSMUST00000108853ENSMUSG00000018583ENSMUST00000018727ENSMUST00000151790ENSMUSG00000065061ENSMUST00000083127ENSMUSG00000086460ENSMUST00000152968ENSMUSG00000087342ENSMUST00000127764
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001U9_0001ENSG00000145907ENST00000356245ENST00000394123ENST00000522761ENSG00000177556ENST00000313115ENSG00000270978ENST00000603996ENSG00000275765ENST00000617069ENST00000623943CIL_0001U9_0002ENSMUSG00000000263ENSMUST00000075603ENSMUST00000102716ENSMUST00000108853ENSMUSG00000018583ENSMUST00000018727ENSMUSG00000065061ENSMUST00000083127ENSMUSG00000086460ENSMUST00000152968ENSMUSG00000087342ENSMUST00000127764
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000145907 ENST00000356245 10.936±0.00 13.955±0.00 4.351±0.00 4.960±0.21 11.204±2.18 14.500±4.89 7.750±3.14 16.857±9.79 8.589±0.69 10.193±1.38 17.803±12.52 19.084±6.86 20.880±6.49 30.162±5.32
ENST00000394123 N/A N/A 2.544±0.00 1.382±0.00 3.709±0.00 5.003±0.83 2.636±0.00 4.237±0.59 4.706±2.65 6.702±0.00 3.206±1.32 6.911±1.64 3.670±1.74 5.727±0.10
ENST00000507878 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000517947 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518726 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519832 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520006 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520177 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520578 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522367 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522666 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522761 17.712±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 20.066±0.00
ENST00000523519 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000177556 ENST00000313115 N/A N/A N/A 67.710±0.00 N/A N/A N/A N/A 71.584±0.00 N/A N/A 55.837±0.00 93.844±2.59 N/A
ENST00000520382 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521264 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522145 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522314 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522710 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524142 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000270978 ENST00000603996 0.137±0.00 0.043±0.00 N/A 0.269±0.00 0.053±0.00 0.110±0.00 0.039±0.00 0.029±0.00 0.013±0.00 0.068±0.00 0.222±0.00 0.039±0.01 N/A 0.032±0.00
ENSG00000275765 ENST00000617069 3.645±0.00 2.864±0.00 0.562±0.00 1.153±0.87 2.178±2.12 0.618±0.00 0.618±0.47 1.024±0.35 0.535±0.00 0.650±0.45 0.650±0.59 1.342±0.78 0.804±0.23 5.461±3.66
ENST00000623943 1.780±0.00 N/A 0.253±0.00 N/A N/A N/A 0.413±0.00 N/A 0.293±0.00 0.828±0.00 N/A 2.658±1.69 1.194±0.96 12.182±8.17
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000000263 ENSMUST00000075603 N/A N/A N/A 0.398±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.002±0.00 N/A
ENSMUST00000102716 N/A N/A N/A 0.410±0.19 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000108853 0.086±0.04 N/A N/A 0.685±0.00 0.077±0.02 N/A N/A 0.016±0.00 N/A N/A 0.034±0.00 0.017±0.00 N/A 0.037±0.01
ENSMUSG00000018583 ENSMUST00000018727 16.598±6.47 20.658±1.99 18.759±0.77 15.558±6.08 15.449±1.90 17.414±0.89 10.339±0.79 13.708±0.79 14.454±7.40 12.465±0.38 14.111±1.95 23.185±2.13 22.582±15.02 3.115±1.14
ENSMUST00000151790 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000065061 ENSMUST00000083127 N/A N/A 5.933±0.00 N/A N/A N/A 633.715±0.00 N/A 6.139±0.00 540.748±0.00 N/A N/A 41.736±29.14 N/A
ENSMUSG00000086460 ENSMUST00000152968 1.484±0.00 N/A 0.113±0.00 N/A 2.133±0.74 N/A N/A 0.597±0.00 N/A N/A N/A 0.645±0.24 0.730±0.00 0.431±0.07
ENSMUSG00000087342 ENSMUST00000127764 N/A N/A N/A 7.854±0.68 N/A N/A N/A N/A 23.233±4.28 N/A N/A 35.626±0.00 9.631±5.54 N/A

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