C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAD51 paralog D
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000345365 RAD51D-001 ENSG00000185379 9606 - 17:35092208-35119869 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverOvaryPlacentaENST00000345365
Transcript ID Liver Ovary Placenta
ENST00000345365 0.921±0.00 1.075±0.00 1.389±0.37

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006ES CIL_0006ES_0001 CGP 17:35092208-35130732

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000400 IDA four-way junction DNA binding
GO:0000723 IMP telomere maintenance
GO:0000724 IMP double-strand break repair via homologous recombination
GO:0000781 IDA chromosome, telomeric region
GO:0003677 IEA:TAS DNA binding
GO:0003678 IEA DNA helicase activity
GO:0003697 IDA single-stranded DNA binding
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 TAS nucleus
GO:0005657 IDA replication fork
GO:0005737 IEA cytoplasm
GO:0005813 IDA centrosome
GO:0006200 IEA ATP catabolic process
GO:0006259 IEA DNA metabolic process
GO:0006260 IEA DNA replication
GO:0006281 TAS DNA repair
GO:0007131 TAS reciprocal meiotic recombination
GO:0008094 IEA:IDA DNA-dependent ATPase activity
GO:0033063 IDA Rad51B-Rad51C-Rad51D-XRCC2 complex
GO:0042148 IDA strand invasion
GO:0043015 IDA gamma-tubulin binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000018985 Rad51d-001 protein_coding Mus_musculus 0 928
ENSMUST00000100718 Rad51d-006 nonsense_mediated_decay Mus_musculus 0 837
ENSMUST00000135963 Rad51d-004 nonsense_mediated_decay Mus_musculus 0 680
ENSMUST00000146053 Rad51d-002 nonsense_mediated_decay Mus_musculus 0 673
ENSMUST00000092844 Rad51d-003 protein_coding Mus_musculus 0 429
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.00000008 66
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.00005 57

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