C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: squamous cell carcinoma antigen recognized by T cells 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000019118 Sart3-201 ENSMUSG00000018974 10090 - 5:113742446-113771649 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000019118
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000019118 3.506±2.00 4.696±0.71 4.919±0.64 16.040±5.69 3.051±0.64 4.643±1.18 3.125±0.45 4.318±1.03 5.980±4.84 4.654±0.98 2.543±0.37 11.006±6.69 16.493±10.52 5.483±3.41

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001MA CIL_0001MA_0002 CGP 5:113735782-113771649
CIL_0001M7 CIL_0001M7_0002 CGP 5:113742446-113778288

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000244 ISS spliceosomal tri-snRNP complex assembly
GO:0000902 IMP cell morphogenesis
GO:0003723 ISA RNA binding
GO:0005515 IEA protein binding
GO:0005634 ISA nucleus
GO:0005737 IEA cytoplasm
GO:0010468 ISO regulation of gene expression
GO:0044822 IEA poly(A) RNA binding
GO:0048872 IMP homeostasis of number of cells
GO:0071425 IMP hematopoietic stem cell proliferation
GO:1990381 IEA ubiquitin-specific protease binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000228284 SART3-001 protein_coding Homo_sapiens 0 2697
ENST00000431469 SART3-005 protein_coding Homo_sapiens 0 1434
ENST00000546728 SART3-003 nonsense_mediated_decay Homo_sapiens 0 2630
ENST00000546815 SART3-006 protein_coding Homo_sapiens 0 662
ENST00000547397 SART3-011 protein_coding Homo_sapiens 0 425
ENST00000547528 SART3-004 nonsense_mediated_decay Homo_sapiens 0 822
ENST00000550322 SART3-008 protein_coding Homo_sapiens 0 599
ENST00000550619 SART3-015 protein_coding Homo_sapiens 0 449
ENST00000552221 SART3-007 processed_transcript Homo_sapiens 1.4013e-45 187

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