C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein D
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000019128 Hnrnpd-002 ENSMUSG00000000568 10090 - 5:99960598-99978937 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainKidneyLiverPlacentaTestisENSMUST00000019128
Transcript ID Brain Kidney Liver Placenta Testis
ENSMUST00000019128 25.860±2.90 2.075±0.14 16.295±4.92 12.353±1.02 2.422±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 ISS RNA binding
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0030529 ISS ribonucleoprotein complex
GO:0042162 ISS telomeric DNA binding
GO:0042752 ISS regulation of circadian rhythm
GO:0043488 IMP regulation of mRNA stability
GO:0045727 ISS positive regulation of translation
GO:0097167 ISS circadian regulation of translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000313899 HNRNPD-001 protein_coding Homo_sapiens 0 1570
ENST00000352301 HNRNPD-003 protein_coding Homo_sapiens 0 920
ENST00000353341 HNRNPD-002 protein_coding Homo_sapiens 0 2322
ENST00000503822 HNRNPD-007 protein_coding Homo_sapiens 0 407
ENST00000507010 HNRNPD-008 protein_coding Homo_sapiens 0 1033
ENST00000508119 HNRNPD-012 processed_transcript Homo_sapiens 0 440
ENST00000509107 HNRNPD-009 protein_coding Homo_sapiens 0 420
ENST00000509263 HNRNPD-011 protein_coding Homo_sapiens 0 1013
ENST00000513584 HNRNPD-004 nonsense_mediated_decay Homo_sapiens 0 616
ENST00000514325 HNRNPD-006 retained_intron Homo_sapiens 0 542
ENST00000514671 HNRNPD-005 nonsense_mediated_decay Homo_sapiens 0 1077
ENST00000515432 HNRNPD-010 protein_coding Homo_sapiens 0 568

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