C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000196061 PLOD1-001 ENSG00000083444 9606 + 1:11934753-11975537 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000196061
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000196061 31.536±0.00 37.984±0.00 3.929±0.00 14.524±0.00 22.041±17.89 29.421±25.90 11.338±9.39 21.533±17.66 26.711±25.35 14.434±12.65 12.947±0.00 46.344±28.81 102.826±22.32 21.722±13.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00087H CIL_00087H_0001 VISTA 1:11580820-12184055
CIL_00022Y CIL_00022Y_0002 CGP 1:11919591-11975538
CIL_00022Z CIL_00022Z_0002 CGP 1:11934205-12013514

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001666 IEP response to hypoxia
GO:0005506 IEA iron ion binding
GO:0005789 TAS endoplasmic reticulum membrane
GO:0006464 NAS cellular protein modification process
GO:0008475 IEA procollagen-lysine 5-dioxygenase activity
GO:0008544 TAS epidermis development
GO:0016491 IEA oxidoreductase activity
GO:0016705 IEA oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0016706 IEA oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0030198 TAS extracellular matrix organization
GO:0031418 IEA L-ascorbic acid binding
GO:0042803 TAS protein homodimerization activity
GO:0046947 TAS hydroxylysine biosynthetic process
GO:0055114 TAS:IEA oxidation-reduction process
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000019199 Plod1-001 protein_coding Mus_musculus 0 2409
ENSMUST00000124292 Plod1-006 retained_intron Mus_musculus 0 1083
ENSMUST00000105712 Plod1-007 protein_coding Mus_musculus 0 732
ENSMUST00000149129 Plod1-005 protein_coding Mus_musculus 0 599
ENSMUST00000132075 Plod1-002 processed_transcript Mus_musculus 1.96182e-44 185

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