C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: growth factor receptor bound protein 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000019456 Grb7-001 ENSMUSG00000019312 10090 + 11:98446834-98455373 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000019456
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000019456 5.236±3.96 0.452±0.08 12.568±3.83 0.424±0.13 9.334±2.71 47.003±5.41 0.180±0.12 56.833±5.01 38.522±19.49 14.710±1.38 0.072±0.00 3.955±2.14 8.961±7.90 0.739±0.25

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008SN CIL_0008SN_0002 VISTA 11:97857859-98458466
CIL_00080Z CIL_00080Z_0002 VISTA 11:98039002-98639485
CIL_00098W CIL_00098W_0002 VISTA 11:98077499-98680383
CIL_0007WH CIL_0007WH_0002 VISTA 11:98091902-98695006
CIL_0002E0 CIL_0002E0_0002 CGP 11:98437708-98455373
CIL_0002PT CIL_0002PT_0002 CGP 11:98446394-98546031

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0005070 TAS SH3/SH2 adaptor activity
GO:0005515 IPI protein binding
GO:0005829 TAS:ISS cytosol
GO:0005886 IEA plasma membrane
GO:0005925 ISS focal adhesion
GO:0007165 TAS signal transduction
GO:0009967 TAS positive regulation of signal transduction
GO:0010494 IDA cytoplasmic stress granule
GO:0017148 IMP negative regulation of translation
GO:0019901 IEA protein kinase binding
GO:0030335 ISS positive regulation of cell migration
GO:0034063 IMP stress granule assembly
GO:0035091 ISS phosphatidylinositol binding
GO:0042802 IEA identical protein binding
GO:0042995 IEA cell projection

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000309156 GRB7-001 protein_coding Homo_sapiens 0 1672
ENST00000394204 GRB7-003 protein_coding Homo_sapiens 0 1323
ENST00000394209 GRB7-009 protein_coding Homo_sapiens 0 1672
ENST00000394211 GRB7-002 protein_coding Homo_sapiens 0 1672
ENST00000445327 GRB7-006 protein_coding Homo_sapiens 0 1672
ENST00000473071 GRB7-007 retained_intron Homo_sapiens 0 268
ENST00000485182 GRB7-005 retained_intron Homo_sapiens 0 211
ENST00000577695 GRB7-011 protein_coding Homo_sapiens 0 211
ENST00000578702 GRB7-014 processed_transcript Homo_sapiens 0 294
ENST00000584053 GRB7-013 retained_intron Homo_sapiens 0 211
ENST00000584819 GRB7-008 retained_intron Homo_sapiens 0 468

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