C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: COP9 (constitutive photomorphogenic) homolog, subunit 3 (Arabidopsis thaliana)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000019517 Cops3-001 ENSMUSG00000019373 10090 - 11:59817795-59839838 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000019517
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000019517 17.194±6.37 18.784±1.99 24.263±2.33 12.562±3.71 8.495±1.02 14.659±0.67 9.881±0.17 19.010±13.22 7.427±0.00 34.693±3.21 16.537±10.65 33.486±10.85 30.163±1.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009A0 CIL_0009A0_0002 VISTA 11:59693037-60296757
CIL_00040N CIL_00040N_0002 CGP 11:59791408-59839838
CIL_0000NX CIL_0000NX_0002 CGP 11:59817795-59880968

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001701 IMP in utero embryonic development
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0008180 IDA COP9 signalosome
GO:0010388 IEA cullin deneddylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000268717 COPS3-001 protein_coding Homo_sapiens 0 1936
ENST00000417352 COPS3-008 protein_coding Homo_sapiens 0 1166
ENST00000439936 COPS3-002 protein_coding Homo_sapiens 0 1042
ENST00000462236 COPS3-003 retained_intron Homo_sapiens 0 394
ENST00000477299 COPS3-006 nonsense_mediated_decay Homo_sapiens 0 556
ENST00000486810 COPS3-004 retained_intron Homo_sapiens 0 821
ENST00000492672 COPS3-007 nonsense_mediated_decay Homo_sapiens 0 1042
ENST00000495640 COPS3-005 nonsense_mediated_decay Homo_sapiens 0 327
ENST00000505334 RP11-91J3.1-001 processed_pseudogene Homo_sapiens 0 215
ENST00000539941 COPS3-014 protein_coding Homo_sapiens 0 1783
ENST00000577210 COPS3-019 nonsense_mediated_decay Homo_sapiens 0 808
ENST00000577246 COPS3-015 nonsense_mediated_decay Homo_sapiens 0 752
ENST00000578317 COPS3-013 nonsense_mediated_decay Homo_sapiens 0 1358
ENST00000579716 COPS3-020 protein_coding Homo_sapiens 1e-33 147
ENST00000583160 COPS3-018 protein_coding Homo_sapiens 0 348
ENST00000584216 COPS3-016 nonsense_mediated_decay Homo_sapiens 0 701

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