C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: COP9 signalosome subunit 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000268717 COPS3-001 ENSG00000141030 9606 - 17:17246836-17281293 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000268717
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000268717 12.807±0.00 13.858±0.00 0.809±0.00 17.426±8.73 10.528±5.19 11.723±6.51 11.189±8.32 8.229±3.88 5.580±3.22 8.326±4.78 41.637±0.00 15.218±7.06 15.805±8.69 45.919±26.98

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00040N CIL_00040N_0001 CGP 17:17212212-17281293
CIL_0009A0 CIL_0009A0_0001 VISTA 17:17235872-17840873
CIL_0000NX CIL_0000NX_0001 CGP 17:17246820-17347663

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001701 IEA in utero embryonic development
GO:0005515 IPI:IEA protein binding
GO:0005737 IEA cytoplasm
GO:0007165 TAS signal transduction
GO:0008180 IDA COP9 signalosome
GO:0009416 TAS response to light stimulus
GO:0010388 IDA cullin deneddylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000019517 Cops3-001 protein_coding Mus_musculus 0 1936
ENSMUST00000124101 Cops3-002 processed_transcript Mus_musculus 0 1400
ENSMUST00000136901 Cops3-008 processed_transcript Mus_musculus 0 767
ENSMUST00000156837 Cops3-004 protein_coding Mus_musculus 0 715
ENSMUST00000130027 Cops3-005 processed_transcript Mus_musculus 0 617
ENSMUST00000133652 Cops3-006 processed_transcript Mus_musculus 0 339
ENSMUST00000141415 Cops3-003 protein_coding Mus_musculus 0 300
ENSMUST00000154699 Nt5m-003 processed_transcript Mus_musculus 3e-25 121
ENSMUST00000149076 Nt5m-002 processed_transcript Mus_musculus 3e-25 121

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