C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: COP9 signalosome subunit 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000578317 COPS3-013 ENSG00000141030 9606 - 17:17246837-17281191 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastHeartLiverENST00000578317
Transcript ID Adipose Adrenal Breast Heart Liver
ENST00000578317 1.727±0.00 2.869±0.00 1.983±0.00 1.193±0.00 1.084±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00040N CIL_00040N_0001 CGP 17:17212212-17281293
CIL_0009A0 CIL_0009A0_0001 VISTA 17:17235872-17840873
CIL_0000NX CIL_0000NX_0001 CGP 17:17246820-17347663

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000019517 Cops3-001 protein_coding Mus_musculus 0 1358
ENSMUST00000130027 Cops3-005 processed_transcript Mus_musculus 0 1175
ENSMUST00000136901 Cops3-008 processed_transcript Mus_musculus 0 1131
ENSMUST00000124101 Cops3-002 processed_transcript Mus_musculus 0 822
ENSMUST00000156837 Cops3-004 protein_coding Mus_musculus 0 715
ENSMUST00000133652 Cops3-006 processed_transcript Mus_musculus 0 198
ENSMUST00000141415 Cops3-003 protein_coding Mus_musculus 0 196
ENSMUST00000154699 Nt5m-003 processed_transcript Mus_musculus 3e-20 104
ENSMUST00000149076 Nt5m-002 processed_transcript Mus_musculus 3e-20 104

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