C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: COP9 (constitutive photomorphogenic) homolog, subunit 3 (Arabidopsis thaliana)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000019373 Cops3 10090 - 11:59817795-59839838 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000019517 Cops3-001 59817795-59839838 protein_coding
  ENSMUST00000124101 Cops3-002 59823286-59839838 processed_transcript
  ENSMUST00000126489 Cops3-007 59817795-59818687 processed_transcript
  ENSMUST00000130027 Cops3-005 59826210-59839838 processed_transcript
  ENSMUST00000133652 Cops3-006 59836638-59839812 processed_transcript
  ENSMUST00000136901 Cops3-008 59824314-59833293 processed_transcript
  ENSMUST00000141415 Cops3-003 59833091-59839752 protein_coding
  ENSMUST00000156837 Cops3-004 59821360-59836935 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000019517ENSMUST00000156837
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000019517 17.194±6.37 18.784±1.99 24.263±2.33 12.562±3.71 8.495±1.02 14.659±0.67 9.881±0.17 19.010±13.22 7.427±0.00 34.693±3.21 16.537±10.65 33.486±10.85 30.163±1.22
ENSMUST00000156837 N/A N/A 14.903±0.00 N/A N/A N/A N/A N/A N/A N/A 15.078±0.00 38.077±2.30 37.287±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009A0 CIL_0009A0_0002 VISTA 11:59693037-60296757
CIL_00040N CIL_00040N_0002 CGP 11:59791408-59839838
CIL_0000NX CIL_0000NX_0002 CGP 11:59817795-59880968

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001701 IMP in utero embryonic development
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0008180 IDA COP9 signalosome
GO:0010388 IEA cullin deneddylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000008623 cops3 COP9 constitutive photomorphogenic homolog subunit 3 protein_coding Danio_rerio
ENSG00000141030 COPS3 COP9 signalosome subunit 3 protein_coding Homo_sapiens

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